Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 93/394 (23%), Positives = 161/394 (40%), Gaps = 67/394 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKD--G 67
           M + ++A+ V A  +A  A A           + +Y+  G  +++ G+ +AR +  D  G
Sbjct: 1   MKRKVLAIVVPALLMAGAANA-----------AEMYNKNGNKVDLYGKVDARHTFSDNPG 49

Query: 68  KAQDNSRVRLNFLGKAEINDSLYGVGFYEGE-FTTNDQGKNASNNSLDNRYTYAGIG-GT 125
              D + V++ F G+  I + L G G +E + F  N +G  A + S  NR  YAG+  G 
Sbjct: 50  DDGDETYVQVGFKGETRIANDLIGYGQWEYKTFANNTEG--AGDKSF-NRLAYAGLKYGE 106

Query: 126 YGEVTYGKNDGALGVITDFTDIMSYHGNTAA--EKIAVADRVDNMLAYKGQ--FG---DL 178
           YG   YG+N G +  +  +TD++   G  +       +  R + +  Y+ Q  FG    L
Sbjct: 107 YGSFDYGRNYGVVYDVEAWTDMLPVFGGDSYTWTDNFMNGRANGLATYRNQDFFGLVEGL 166

Query: 179 GVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTF-GD-TGFNVGAGYAD 236
                Y+ A+           T+           DG+ +S  Y F GD +G ++GA Y+ 
Sbjct: 167 NFALQYQGANEGQDATEDQEGTKNGHDDVRFQNGDGFGMSTSYDFAGDLSGLSLGAAYSS 226

Query: 237 QDDQNE---------------------YMLAASYRMENLYFAGLFTDGELAKDVDYTG-- 273
            D  NE                     + + A Y   N+Y A ++ +      +   G  
Sbjct: 227 SDRTNEQVAYGKAAEGIGYAGGDKAEAWTVGAKYDANNVYLAMMYAETRNMTPIGNVGIA 286

Query: 274 -----YELAAGYKLGQAAFTATYNNAETAKETSADNFAID--------ATYYFKPNFRSY 320
                +E  A Y+       +        K+     F  D         TY F  NF +Y
Sbjct: 287 NQTQNFEAVAQYQFDFGLRPSLAWVYSKGKDLDGKGFNQDLVNYIDLGMTYSFNKNFSTY 346

Query: 321 ISYQFNLLDSDK----VGKVASEDELAIGLRYDF 350
           + Y+ N+LD+D+       ++++D + +G+ Y F
Sbjct: 347 VDYKINMLDNDEALYDAYGISTDDIVGVGMTYQF 380