Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., Outer membrane protein (porin) from Enterobacter asburiae PDN3

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 98/392 (25%), Positives = 165/392 (42%), Gaps = 72/392 (18%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   +++L V A  VA  A A           + +Y+  G  L++ G+ +      D K+
Sbjct: 1   MKVKVLSLLVPALLVAGAANA-----------AEIYNKDGNKLDLYGKVDGLHYFSDDKS 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
            D  +  +RL F G+ ++ND L G G +E +   N    + S N    R  +AG+     
Sbjct: 50  ADGDQTYMRLGFKGETQVNDQLTGYGQWEYQIQGNT---SESENDAWTRVAFAGLKFADA 106

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYKGQ--FGDL-GVKA 182
           G   YG+N G +  +T +TD++  + G+T      +  R + +  Y+ Q  FG + G+  
Sbjct: 107 GSFDYGRNYGVIYDVTSWTDVLPEFGGDTYGADNFLQSRANGVATYRNQDFFGLVDGLNF 166

Query: 183 SYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGY------AD 236
           + ++  +N   +  N   +T  +    NG DGY  S  Y  G+ GF++G         AD
Sbjct: 167 ALQYQGKNGSVSGEN---DTGRSLLKQNG-DGYGASVTYNLGE-GFSIGGAMSSSKRTAD 221

Query: 237 QD-----------------------DQNEYMLAASYRMENLYFAGLFTDGELAKDV---- 269
           Q+                       D N   LAA Y     Y A  F + + + D+    
Sbjct: 222 QNNTANLALKGEGDRAEVYSGGLKYDANNIYLAAQY--SQTYNATRFGNSQSSSDIYGFA 279

Query: 270 -DYTGYELAAGYKL--GQAAFTATYNNAETAKETSADN-----FAIDATYYFKPNFRSYI 321
                +E+ A Y+   G     A   +     E   D        + ATYYF  N  +Y+
Sbjct: 280 NKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDIEGYGDQDLLKYVDVGATYYFNKNMSTYV 339

Query: 322 SYQFNLLDSDKVGK---VASEDELAIGLRYDF 350
            Y+ NL+D ++  +   + ++D +A+GL Y F
Sbjct: 340 DYKINLVDENEFTRQAGIGTDDIVALGLVYQF 371