Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., Outer membrane protein from Escherichia coli ECRC98

 Score = 45.8 bits (107), Expect = 9e-10
 Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 33/197 (16%)

Query: 162 ADRVDNMLAYKGQFGDLGVKASYRFADRNAVDAMGNVVTE-TNAAKYSDNGEDGYSLSAI 220
           +DR DN + +KG           R+ DR    A G      T  AKY  N      L+A+
Sbjct: 20  SDRTDNQV-HKGTHNT-------RYGDRFDATAGGETAEAWTVGAKYDANN---VYLAAM 68

Query: 221 YTFGDTGFNVGAGYADQDDQNEYMLAASYRME---NLYFAGLFTDGELAKDVDYTGYELA 277
           Y         G   A  +    + + A Y+ +       A L + G+    V+   ++  
Sbjct: 69  YAEPRNMTGYGDADAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGVNSDNFDSQ 128

Query: 278 AGYKLGQAAFTATYNNAETAKETSADNFAIDATYYFKPNFRSYISYQFNLLDSD----KV 333
             +          Y N +  K        I  TYYF  N  +Y+ Y+ NLLD+D    K 
Sbjct: 129 GNHH---------YTNKDLVKYVD-----IGMTYYFNKNMSTYVDYKINLLDNDDDFYKE 174

Query: 334 GKVASEDELAIGLRYDF 350
             +A++D +A+GL Y F
Sbjct: 175 NGIATDDIVAVGLVYQF 191