Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Outer membrane porin protein LC from Escherichia coli ECRC62

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 93/372 (25%), Positives = 153/372 (41%), Gaps = 57/372 (15%)

Query: 24  VATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR--LSLKDGKAQDNSRVRLNFLG 81
           VA  A A  +  +     + +Y+     L++ G+  A+   S  D    D + VRL F G
Sbjct: 6   VAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKHYFSSNDADDGDTTYVRLGFKG 65

Query: 82  KAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTYGEVTYGKNDGALGV 140
           + +IND L G G +E EF  N      S+     R  +AG+  G YG + YG+N G    
Sbjct: 66  ETQINDQLTGFGQWEYEFKGNRAESQGSSKD-KTRLAFAGLKFGDYGSIDYGRNYGVAYD 124

Query: 141 ITDFTDIM-SYHGNTAAEK-IAVADRVDNMLAYKGQ--FGDL-GVKASYRFADRNAVDAM 195
           I  +TD++  + G+T  +  + +  R   +  Y+    FG + G+  + ++  +N     
Sbjct: 125 IGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNNDFFGLVDGLNFAAQYQGKNDRSDF 184

Query: 196 GNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQD----------------- 238
            N         Y++   DG+  SA Y +   GF +GA YA  D                 
Sbjct: 185 DN---------YTEGNGDGFGFSATYEY--EGFGIGATYAKSDRTDTQVNAGKVLPEVFA 233

Query: 239 --------------DQNEYMLAASY-RMENL-YFAGLFTDGELAKDVDYTGYELAAGYKL 282
                         D N   LA +Y   +N+  FA  F   +         Y+   G + 
Sbjct: 234 SGKNAEVWAAGLKYDANNIYLATTYSETQNMTVFADHFVANKAQNFEAVAQYQFDFGLRP 293

Query: 283 GQAAFTATYNNAETAKETSADNFA-IDATYYFKPNFRSYISYQFNLLDSDKVGK---VAS 338
             A   +   +     +     +  + ATYYF  N  +++ Y+ NLLD +   K   V++
Sbjct: 294 SVAYLQSKGKDLGVWGDQDLVKYVDVGATYYFNKNMSTFVDYKINLLDKNDFTKALGVST 353

Query: 339 EDELAIGLRYDF 350
           +D +A+GL Y F
Sbjct: 354 DDIVAVGLVYQF 365