Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., Putative outer membrane protein YedS from Escherichia coli ECRC62

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 102/410 (24%), Positives = 168/410 (40%), Gaps = 84/410 (20%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKD--G 67
           M + ++A+ V A  VA  A A           + VY+  G  L++ G+        D  G
Sbjct: 1   MKRKVLAMLVPALLVAGAANA-----------AEVYNKDGNKLDLYGKVAGLHYFSDDAG 49

Query: 68  KAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
              D S  R+ F G+ +I D   G G +E     N  G     ++   R  +AG+G G  
Sbjct: 50  SDGDMSYARIGFKGETQIADQFTGYGQWEYNLQAN--GTEGDGDNSATRLAFAGLGFGQN 107

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNT-AAEKIAVADRVDNMLAYK--GQFGDL-GVK 181
           G   YG+N G +  I  +TD++  + G+T A     +  R + +  Y+  G FG + G+ 
Sbjct: 108 GTFDYGRNYGVVYDIEAWTDMLPEFGGDTYAGADNFMNGRTNGVATYRNNGFFGQVDGLN 167

Query: 182 ASYRFADRNAVDAMGNVVTETNAA-----KYSDNGEDGYSLSAIYTFGDTGFNVGAGYAD 236
            + ++   N     G +  +  +      K S    DGY +S  Y F D G + GA Y++
Sbjct: 168 FALQYQGNNEGSGDGFLFGQEGSGSGDGRKLSKENGDGYGMSTSYNF-DFGLSFGAAYSN 226

Query: 237 QD----------------DQNE----------YMLAASYRMENLYFAGLFTD-------G 263
            D                D+N+          + + A Y   N+Y A ++ +       G
Sbjct: 227 SDRTDEQTKPDFHNTRAGDRNDITAGGETAEAWTVGAKYDANNVYLAAMYAETRNMTGYG 286

Query: 264 ELAKDVDYT-GYELAAGYK------------------LGQAAFTATYNNAETAKETSADN 304
           +     + T  +E+ A Y+                  LG  A     +   T K+     
Sbjct: 287 DANAIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDL-VKY 345

Query: 305 FAIDATYYFKPNFRSYISYQFNLLDSD----KVGKVASEDELAIGLRYDF 350
             + ATYYF  N  +Y+ Y+ NLLD+D    +   +A++D +A+GL Y F
Sbjct: 346 VEVGATYYFNKNMSTYVDYKINLLDNDDDFYEANGIATDDIVAVGLVYQF 395