Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., porin OmpC from Escherichia coli ECRC62

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 95/391 (24%), Positives = 156/391 (39%), Gaps = 67/391 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   +++L V A  VA  A A           + VY+  G  L++ G+ +      D K+
Sbjct: 1   MKVKVLSLLVPALLVAGAANA-----------AEVYNKDGNKLDLYGKVDGLHYFSDNKS 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D  +  VRL F G+ ++ D L G G +E +   N    N  N+    R  +AG+     
Sbjct: 50  EDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSW--TRVAFAGLKFQDV 107

Query: 127 GEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYKGQ--FGDL-GVKA 182
           G   YG+N G +  +T +TD++  + G+T      +  R +    Y+    FG + G+  
Sbjct: 108 GSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGYATYRNTDFFGLVDGLNF 167

Query: 183 SYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQ---DD 239
           + ++  +N     G  +T         NG DG   S  Y +   GF +GA  +     DD
Sbjct: 168 AVQYQGKNG-SVSGEGMTNNGRGALRQNG-DGVGGSITYDY--EGFGIGAAVSSSKRTDD 223

Query: 240 QN------------------EYMLAASYRMENLYFAGLFTDGELAKDVDYTG-------- 273
           QN                   Y     Y   N+Y A  +T    A  V   G        
Sbjct: 224 QNFGLNGYGERYLGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNF 283

Query: 274 -----YELAAGYKLGQAAFTATYNNAETAKETSADN------FAIDATYYFKPNFRSYIS 322
                Y+   G +   A   +   N       + D+        + ATYYF  N  +Y+ 
Sbjct: 284 EAVAQYQFDFGLRPSVAYLQSKGKNLGVVAGRNYDDEDILKYVDVGATYYFNKNMSTYVD 343

Query: 323 YQFNLLDSDKVGK---VASEDELAIGLRYDF 350
           Y+ NLLD ++  +   + +++ +A+GL Y F
Sbjct: 344 YKINLLDDNQFTRDAGINTDNIVALGLVYQF 374