Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., porin OmpC from Escherichia coli ECRC102

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 96/386 (24%), Positives = 158/386 (40%), Gaps = 64/386 (16%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   +++L V A  VA  A A           + VY+  G  L++ G+ +      D K+
Sbjct: 1   MKVKVLSLLVPALLVAGAANA-----------AEVYNKDGNKLDLYGKVDGLHYFSDDKS 49

Query: 70  QDNSR--VRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASN-NSLDNRYTYAGIG-GT 125
            D  +  +RL F G+ ++ D L G G +E +     QG +A N N+   R  +AG+    
Sbjct: 50  VDGDQTYMRLGFKGETQVTDQLTGYGQWEYQI----QGNSAENENNSWTRVAFAGLKFQD 105

Query: 126 YGEVTYGKNDGALGVITDFTDIM-SYHGNTAAEKIAVADRVDNMLAYKGQ--FGDL-GVK 181
            G   YG+N G +  +T +TD++  + G+T      +  R +    Y+    FG + G+ 
Sbjct: 106 VGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLN 165

Query: 182 ASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQ---D 238
            + ++  +N     G  +T         NG DG   S  Y +   GF +GA  +     D
Sbjct: 166 FAVQYQGKNG-SVSGEGMTNNGREALRQNG-DGVGGSITYDY--EGFGIGAAVSSSKRTD 221

Query: 239 DQNE------------YMLAASYRMENLYFAGLFTDGELAKDVDYTG------------- 273
           DQN             Y     Y   N+Y A  +T    A  V   G             
Sbjct: 222 DQNSPLYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQ 281

Query: 274 YELAAGYKLGQAAFTATYNNAETAKETSADN------FAIDATYYFKPNFRSYISYQFNL 327
           Y+   G +   A   +   N       + D+        + ATYYF  N  +Y+ Y+ NL
Sbjct: 282 YQFDFGLRPSLAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFNKNMSTYVDYKINL 341

Query: 328 LDSDKVGK---VASEDELAIGLRYDF 350
           LD ++  +   + +++ +A+GL Y F
Sbjct: 342 LDDNQFTRDAGINTDNIVALGLVYQF 367