Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Outer membrane porin C 2 from Escherichia coli ECRC101

 Score = 91.3 bits (225), Expect = 4e-23
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 55/372 (14%)

Query: 22  AAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKAQDNSRV--RLNF 79
           A V TG  A  +  + +     VY+  G  L++ G+  A     D K  D  +   RL F
Sbjct: 7   AVVVTGLLAANVAHAAE-----VYNKDGNKLDLYGKVTALRYFTDDKRDDGDKTYARLGF 61

Query: 80  LGKAEINDSLYGVGFYEGEFT-TNDQGKNASNNSLDNRYTYAGIG-GTYGEVTYGKNDGA 137
            G+ +IND + G G +E +F   ND+   + +N    R  YAG+    +G + YG+N G 
Sbjct: 62  KGETQINDQMIGFGHWEYDFKGYNDEANGSRDNK--TRLAYAGLKISEFGSLDYGRNYGV 119

Query: 138 LGVITDFTDIM-SYHGNTAAEK-IAVADRVDNMLAYKGQFGDLGVKASYRFADRNAVDAM 195
              I  +TD++  + G+T ++K + +  R   +  Y+  +   G+     FA +      
Sbjct: 120 GYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGVATYR-NYDFFGLIEGLNFAAQYQGKNE 178

Query: 196 GNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQNEYMLAAS------- 248
               +    A Y+    DG+ +S+ Y +   GF +GA Y   D  N    AA+       
Sbjct: 179 RTDNSHLYGADYTRANGDGFGISSTYVY--DGFGIGAVYTKSDRTNAQERAAANPLNASG 236

Query: 249 -----------YRMENLYFAG---------LFTDGELAKDVDYTGYELAAGYKLG----- 283
                      Y   N+YFA           + DG ++       +E+ A Y+       
Sbjct: 237 KNAELWATGIKYDANNIYFAANYAETLNMTTYGDGYISNKAQ--SFEVVAQYQFDFGLRP 294

Query: 284 QAAFTAT--YNNAETAKETSADNFAIDATYYFKPNFRSYISYQFNLLDSD---KVGKVAS 338
             A+  +   +      +   +   + ATY+F  N  +Y+ Y+ NL+D     +   + +
Sbjct: 295 SLAYLKSKGIDLGRYGDQDMIEYIDVGATYFFNKNMSTYVDYKINLIDESDFTRAVDIRT 354

Query: 339 EDELAIGLRYDF 350
           ++ +A G+ Y F
Sbjct: 355 DNIVATGITYQF 366