Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., porin from Dickeya dadantii 3937

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 92/388 (23%), Positives = 152/388 (39%), Gaps = 69/388 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEAR--LSLKDG 67
           M + L+A+ + A   A  A A           + VY+  G  L++ G+       S  D 
Sbjct: 1   MKRNLLAVVIPALLAAGAANA-----------AEVYNKDGNKLDLNGKVVGLHYFSKDDN 49

Query: 68  KAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTND-QGKNASNNSLDNRYTYAGIG-GT 125
              D S VRL F G+ +I   L G G +E  F  +  +  N   N+   RY YAG+    
Sbjct: 50  NKGDQSYVRLGFKGETQITKDLTGYGRFEHNFNASQAEDTNGGANASKTRYAYAGLKFSD 109

Query: 126 YGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGVKASYR 185
           +G + YG+N         +TD++   G   A    +  R   +  Y+ +    G+   + 
Sbjct: 110 FGSIDYGRNRSVAYDGISYTDVLPEFGGDQAYTDNLTSRNSGVATYRNK-NFFGLVDGWD 168

Query: 186 FADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVG-AGYADQDDQNEYM 244
           F       A+G     +++++       G+++S+ YT     F VG  G   Q +++E  
Sbjct: 169 F-------ALGYQSAHSDSSRIQKQTGAGWAISSSYT---APFGVGVVGSYTQANRSETQ 218

Query: 245 LA-------------ASYRMENLYFAGLFTD-GELAKDVDYTGYELAAGYKLGQAAFTAT 290
           +A               Y   N+Y A  + +   L    + T     +    G  AF  T
Sbjct: 219 IADGRGDKAEAWATGLKYDANNVYVAATYGEYHNLTYIANSTFSNNTSSAIRGNNAFDKT 278

Query: 291 --------------------YNNAETAKETSA---DNF-----AIDATYYFKPNFRSYIS 322
                               Y  A+    TSA   D++     ++  TY F  NF +Y  
Sbjct: 279 KIFEAVAQYNFDFGLTPSIGYVTAKGEDNTSAARTDDYITKYVSLGMTYSFNKNFSTYTE 338

Query: 323 YQFNLLDSDKVGKVASEDELAIGLRYDF 350
           Y  NLLDS+    +++ D +A+G+ Y F
Sbjct: 339 YDINLLDSNNAYGLSTNDIVAVGIVYQF 366