Pairwise Alignments

Query, 350 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., outer membrane pore protein N, non-specific from Escherichia coli BL21

 Score =  103 bits (257), Expect = 7e-27
 Identities = 103/393 (26%), Positives = 161/393 (40%), Gaps = 68/393 (17%)

Query: 10  MNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKA 69
           M   ++AL + A   A  A+A           + VY+  G  L++ G+ +      D  A
Sbjct: 1   MKSKVLALLIPALLAAGAAHA-----------AEVYNKDGNKLDLYGKVDGLHYFSDNSA 49

Query: 70  QDN--SRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIG-GTY 126
           +D   S  RL F G+ +IND L G G +E     N+    +S N    R  +AG+    Y
Sbjct: 50  KDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNT--ESSKNQSWTRLAFAGLKFADY 107

Query: 127 GEVTYGKNDGALGVITDFTDIMSYHGN---TAAEKIAVADRVDNMLAYKGQ--FGDL-GV 180
           G   YG+N G +  I  +TD++   G    T A+   +  R + +  Y+    FG + G+
Sbjct: 108 GSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNF-MTGRANGVATYRNTDFFGLVNGL 166

Query: 181 KASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ 240
             + ++   N   + G   T        +NG DG+ LS  Y  G  GF+ GA Y   D  
Sbjct: 167 NFAVQYQGNNEGASNGQEGTNNGRDVRHENG-DGWGLSTTYDLG-MGFSAGAAYTSSDRT 224

Query: 241 NE--------------YMLAASYRMENLYFAGLFTDGELAK---DVDYT------GYELA 277
           N+              +     Y   N+Y A ++++        D DY        +E+ 
Sbjct: 225 NDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVT 284

Query: 278 AGYK----LGQAAFTATYNNAETAKETSADNFA------------IDATYYFKPNFRSYI 321
           A Y+    L  A         +      ADN A            + ATYYF  N  +Y+
Sbjct: 285 AQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATYYFNKNMSTYV 344

Query: 322 SYQFNLLDSD----KVGKVASEDELAIGLRYDF 350
            Y+ NLLD D        ++++D +A+GL Y F
Sbjct: 345 DYKINLLDEDDSFYAANGISTDDIVALGLVYQF 377