Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  280 bits (715), Expect = 5e-79
 Identities = 238/1024 (23%), Positives = 449/1024 (43%), Gaps = 44/1024 (4%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L + + VAG   Y  +   + P++  P I+V  S  G   S     +  PLE+ +  + G
Sbjct: 17   LAIGLFVAGTICYFLLGVAALPNMQFPAIFVQASQAGADASTMASTVAAPLERHLGQVPG 76

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            ++ M +++SEG + V + F  G DL  A  DV+ A++ A P LP+        +     +
Sbjct: 77   IETMRSSSSEGRSFVFMLFRTGTDLDAAARDVQAAINAAAPDLPSGLSAAPSYQKANPND 136

Query: 138  QPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMES 195
             P++++ L         +  L    L  +L     + SV+IAG     + + V+   + +
Sbjct: 137  DPIIALALTSDTQSAADLYNLSDTLLAQRLRQLPGVSSVEIAGAATPAIRVDVNLRALNA 196

Query: 196  YGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVITF 255
             GL    + N +   N     GF+  G    ++   +   S +D  +L I       +  
Sbjct: 197  MGLSPDQLRNALGAANVTSPEGFLSNGASTMAISATAQLHSAEDFAQLVIASRNGTPVRL 256

Query: 256  GDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNN 315
             DVA V    +D    A   GKPA+++ + K++  NII TV+LVK  L     R   P  
Sbjct: 257  SDVARVYAGQQDAYQAAWFHGKPAVLMYVYKKADANIIATVDLVKEQL--PALRSYLPPA 314

Query: 316  LLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSLLVGVSIPGSFLTGL 374
              +   +D +  ++  L+++Q  +L ++ +VV+V+   L  +  +L+  V++P S     
Sbjct: 315  TALTPFFDGTPTIRASLHEVQATLLISLAMVVLVMALFLRRLAPTLIAAVAVPLSLAGAF 374

Query: 375  LVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWP 434
            +V+ V G T+N + L AL++A+G +VD AIVV E   R +  GM R +A    A+ + + 
Sbjct: 375  VVMYVLGYTLNNLTLLALVIAIGFVVDDAIVVIENVIRHLDAGMSRLQATLAGAREIGFT 434

Query: 435  ITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVL-GSLFGRPQ 493
            I + TA+ +A F PLLF   +TG FM    +TL+A +  S +++L   P L G   G   
Sbjct: 435  IVSITASLIAVFIPLLFAGGITGMFMHEFSVTLVAAIVVSALVSLTLTPALCGRFLGGHA 494

Query: 494  KVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLMSAAIAFAYG-- 551
               QA  +R+    +G  +   G+ + Y   L  ++RH +      L +  A  + +G  
Sbjct: 495  AKEQAPPSRLARALDGFHA---GMLRIYTRALDFSLRHALAFSLTPLALIVATFYLFGVV 551

Query: 552  KAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGGDD 611
            KAGL    FP  D      +  S   +S  E  + +  +  +++   +  +V +R G   
Sbjct: 552  KAGL----FPAQDTGLIWGRASSSATVSFAESRQRLERLTAMLMADPDVATVGSRLGSSR 607

Query: 612  EIGVVQITPVDWQYRRSVK-----AIIEELEQVTDTFPGVEIEYK----FPD-AGPPVEH 661
            + G      +D + R   +     A++  L      +P + +  +     P   G     
Sbjct: 608  Q-GTSGSFNIDLKTRADGRHDDTFAVLARLSAKAANYPDLNLRLRPVQDLPSGGGGGTSQ 666

Query: 662  DLEIEISARVAD--DLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRFA 719
              +  +S +  D   L +   +++   + NP L ++  +  + G+   I I RD A+R  
Sbjct: 667  GAQYRVSLQGNDLASLQQWLPKLQAELKKNPKLRDVGTDVDEAGLRQNIVIDRDKAARLG 726

Query: 720  ADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTAQG-LV 778
                 +   +       ++     D +  +V ++   P++       +++ V+++ G ++
Sbjct: 727  VSIGSIDGALYDAFGQRQVSTIYSDINQYQV-VVNALPAQTATPEALNRIYVRSSSGRMI 785

Query: 779  PLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLPSSVEF 838
            P+T FA+  P      I   +    + +  +L    ++   +  I+  ++ + +P  +  
Sbjct: 786  PITAFAKQQPGLAPSQITHENQYTTMDLSFNLAPDVSMGEAMAVIQATVQNMRMPGDIRV 845

Query: 839  RIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLL 898
            ++       + S   +    + A+  + I+L   + +      IL+ +  + VG    L 
Sbjct: 846  QMGNDFRRFQQSQSGMGWLILAAVITVYIVLGMLYENLIHPVTILSTLPAAGVGALLALW 905

Query: 899  IFQKPFGIIMSGIGVIALAGIVVNNNIVLID-TYNQLLKRGLSREEAILRTGVQRLRPVL 957
            +      ++ + I ++ L GIV  N I++ID       + G S  EA       R RP++
Sbjct: 906  LTGTELSVV-AQIALVLLIGIVKKNAIMMIDFALVAQREHGKSPLEAAREACTVRFRPIM 964

Query: 958  LTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPC 1017
            +TT+  IL  LP+ +      + +  E   P       L  A+ GGL  +  LTL+ TP 
Sbjct: 965  MTTMVAILAALPIAIG-----LGEGSELRRP-------LGIALIGGLLISQSLTLLSTPA 1012

Query: 1018 LLML 1021
            L ++
Sbjct: 1013 LYVI 1016