Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1079 a.a., efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  256 bits (655), Expect = 5e-72
 Identities = 239/1064 (22%), Positives = 451/1064 (42%), Gaps = 81/1064 (7%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L+V +L+ G+  Y  +P  + P++  P + VS  + G S S    LI  PLE+ +  I G
Sbjct: 17   LMVAVLLLGILGYRQLPVSALPEIEAPSLVVSTQYPGASASTMAALITTPLERNLGQISG 76

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            +  M++ +S G ++++L+F++  D+  A  DV+ A++ AK  LP +   P V      A+
Sbjct: 77   LTMMSSDSSAGLSTIILQFSMDRDIDIAAQDVQAAINQAKGTLPGNLPYPPVYNRVNPAD 136

Query: 138  QPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMES 195
             P+L++ L     +   V  L    +  KL   + +  V IAG+    V + V+P  + +
Sbjct: 137  APILTLKLTSDSRQLREVNDLADSIIAQKLSQVQGVGLVSIAGNVRPAVRVQVNPAQLSN 196

Query: 196  YGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVITF 255
             GL   D+ + +   N     G ++     +S+          +     I  +    +  
Sbjct: 197  LGLTMEDVRSALTQANVNAPKGTLNGKTQSYSIGTNDQLSDAAEYKNTIISYKNNSPVRL 256

Query: 256  GDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNN 315
             DVA V     + +  A  +G+PA++LD++++ G NI++TVE ++ VL E   R   P +
Sbjct: 257  SDVANVVDGVENDQLAAWANGQPAVLLDVRRQPGANIVQTVEQIRRVLPEL--RSALPAD 314

Query: 316  LLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSLLVGVSIPGSFLTGL 374
            + +    D +  ++  + D++  ++  + LV+ VI   L  +  +++  V++P S +   
Sbjct: 315  VHLDVFADRTVTIRASVRDVEFTLILTVFLVIGVIFVFLRRLWATIIPSVAVPLSLMGTF 374

Query: 375  LVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWP 434
             V+A  G++++ + L AL +A G +VD AIV+ E   R +++G    EA    AK + + 
Sbjct: 375  GVMAFTGMSLDNLSLMALTVATGFVVDDAIVMIENIVRYIEQGKDGKEAAEVGAKEIGFT 434

Query: 435  ITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQK 494
            + + T + +A F PLL  P VTG         L   +T S++++L   P++ +   +P +
Sbjct: 435  VLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLTIAVTISMLVSLTLTPMMCAYLLKPDQ 494

Query: 495  VTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHP--IKILCGALLMSAAIAFAYGK 552
            + + + A       G  +  +     Y  +L   + H     ++ GA ++     +    
Sbjct: 495  LPEGDDAHERHAAAGKRTVWSRTVSLYERSLDWVLDHQRLTMLVAGAAVVLTVFLYIVIP 554

Query: 553  AGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGGDD- 611
             GL     PE D    +  V++  +++  + +     + + +        V    G    
Sbjct: 555  KGL----LPEQDTGLITGVVQADDNIAFPQMEDRTKAVAEALRKDPAVAGVAAFIGAGTI 610

Query: 612  ----EIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPD--------AGPPV 659
                  G + I   D   R  +  ++  L+      PGV +  K           A    
Sbjct: 611  NPTLNQGQLSIVLKDRGDRDGLDELLPRLQHAVAGIPGVALYLKPVQDVTLDSRVAATEY 670

Query: 660  EHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRFA 719
            ++ L    S+ +A   ++  Q +R   E      NL+DNG+      K+ I R+ ASR  
Sbjct: 671  QYSLSAVKSSELAGYANQMTQAMRQRPELADVDNNLADNGNA----LKLTIDREKASRLG 726

Query: 720  ADATLVGNTV-------QFVTNGLKIGDY-----LPDDSDEEVDILVRYPSEYRDIG--- 764
                 + +T+       Q  T   ++  Y     +  +     D+L +        G   
Sbjct: 727  VPVQTIDDTLYDAFGQRQISTIFTQLNQYRVVLEVAPEFRTSDDLLTKLTVRGNGNGALT 786

Query: 765  -----RFDQLRVKT------------------AQGLVPLTNFAQIIPEQKQDTIHRVDGR 801
                  F QL+                     A G +PL++            +      
Sbjct: 787  GSTATSFGQLKSSNSATPSGIGNTGNIGFEIGAGGSIPLSSLVSAQMTSAPLVVSHQQQL 846

Query: 802  RVISVMADLKEGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVA 861
              +++  ++  GY+L+  + AI Q   +LN P  +     G+  E   S        + A
Sbjct: 847  PAVTLAFNVAPGYSLSDAVAAIHQVEAQLNFPPQIRGEFVGKAAEFASSLGDEVLLLLAA 906

Query: 862  LAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGI-GVIALAGIV 920
            +  + I+L   + S+     I++ +  + VG    L++      + + GI G++ L GIV
Sbjct: 907  IIVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALILC--GMSLSVDGIVGIVLLIGIV 964

Query: 921  VNNNIVLIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIIN 980
              N I++ID   +  + GL   +AI R  + R RP+++TT   +LG LP+ L   I    
Sbjct: 965  KKNAIMMIDFAIEARRTGLDARDAIRRACLLRFRPIMMTTAAAMLGALPLALGNGIG--- 1021

Query: 981  QKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPCLLMLGRR 1024
               E   P       L  ++ GGL  + ++TL  TP + +   R
Sbjct: 1022 --AELRRP-------LGVSIVGGLLLSQLVTLYTTPVIYLYMER 1056