Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1043 a.a., Multidrug resistance protein MdtC from Xanthobacter sp. DMC5

 Score =  279 bits (714), Expect = 7e-79
 Identities = 257/1030 (24%), Positives = 459/1030 (44%), Gaps = 79/1030 (7%)

Query: 21   FILVA-GVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEGVK 79
            FIL A G+  +  +P    P++ +PI+ V+V+  G +PS+ E  + + +E  +  I GVK
Sbjct: 21   FILTALGIVHFRELPVTQMPNIDLPIVMVTVTQSGAAPSELETQVTKKVENAIAGISGVK 80

Query: 80   EMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAEQP 139
             +T++ SEG +  ++EF++   + +A+ D RDA+   +  LP   DEP +  + +     
Sbjct: 81   HITSSISEGASVTLVEFHLETLVDRAVNDTRDAITKIRMDLPRSIDEPQIQRIDIEG--- 137

Query: 140  VLSVVLYG-TVPERTTVLIARQLRDKL----ESFRQILSVDIAGDREEIVEIIVDPLLME 194
             L +V Y  + P  TT  ++  + D L    +  R +  V   G  +  + I ++P  + 
Sbjct: 138  -LPIVTYAVSAPNMTTEQVSWFIDDTLARALQGVRGVAQVKRQGGVDREIRISLNPDRLM 196

Query: 195  SYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVIT 254
            S G+  +++   +   N  V+ G  + G     ++  +   S++ + +  I +   + + 
Sbjct: 197  SLGITAAEVSRQLRATNLDVSGGRGEVGTQEQPIRTLAGASSVEALADTRIVLSNGRSVR 256

Query: 255  FGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQA-RDDWP 313
             G++ +V     +   FARLDGK  +   + +  G + +   + V   L + +A   D  
Sbjct: 257  LGELGSVVDGAAEQRVFARLDGKSVVAFGVYRAKGFSDVTVYDRVTEELAKLRAAHPDVT 316

Query: 314  NNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLVGVSIPGSFLTG 373
               +  T+     D +  ++ L   I  AI+ V+VV + +  +R +L+  ++IP S L  
Sbjct: 317  ITEIDTTVRFTKSDYESAMHTL---IEGAILAVIVVFLFLRDIRATLITALAIPLSILPT 373

Query: 374  LLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAW 433
              V+ + G ++N V L A+ +  G+LVD AIV  E   R M+ G     A  +AA  +  
Sbjct: 374  FWVMDMLGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGKSPYRAAIEAADEIGL 433

Query: 434  PITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQ 493
             + A+T T  A FAP+ F   + G++ K   LT+   +  SL +A L  P++ + F    
Sbjct: 434  AVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVLFSLAVARLITPLVAAYF---M 490

Query: 494  KVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRH-------PIKILCGALLMSAAI 546
            K T   + R            + + + Y   LA ++RH        I I  G++ +S   
Sbjct: 491  KDTGHREGR-----------DSLVMRGYVRLLAWSVRHRFATIGMGIAIFAGSIWLSTL- 538

Query: 547  AFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTR 606
                    L + F P  D     + V      ++ E  ++  DI +  L   E +SVY  
Sbjct: 539  --------LPSGFLPTNDISRALLSVELPPGSTIAETQKVADDIARAALSLPEVKSVYAT 590

Query: 607  --TGGDDEI----GVVQITPVDWQYR-RSVKAIIEEL--EQVTDTFPGV-EIEYKFPDAG 656
              TGG   +    G V+   V    + RS + I ++    Q + T   + ++   +   G
Sbjct: 591  AGTGGAGGLALSSGEVRKAQVVINLKPRSQRTIDQKTFETQFSKTLAAMPDLRVSWSQNG 650

Query: 657  PPVEHDLEIEISARVADDLDKAAQQVRLWAEAN-PALTNLSDNGSKPGIDWKIDIRRDDA 715
               +   ++ +S      + +AA  V     A+ P L N+  + +    + +I  + D+A
Sbjct: 651  QNTQRGFQVILSGSDGAAVAEAAVAVEKAVRADVPELANVVSSAALDRPEIRIVPKLDEA 710

Query: 716  SRFAADATLVGNTVQFVTNGLKIGDYLPD-----DSDEEVDILVRYPSEYRD-IGRFDQL 769
            +        +  TV+  T    IGD   +       D ++DI V+     R  +  FD L
Sbjct: 711  AELGVSVDTIAETVRIAT----IGDISANLAKFSAKDRQIDIRVQLAENARTRLSTFDAL 766

Query: 770  RVKTAQ-GLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALR 828
            +V TA  G VPL+  A +   +    + R D  R ++V ADL     L   L  ++    
Sbjct: 767  KVPTASGGAVPLSAVADVQFGKGPTALDRYDRARRVAVEADLVGDTPLGDALAKVKALPA 826

Query: 829  ELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIF 888
              NLP+ V  +  G  E           A    L  +  +L+  F+   Q   IL ++  
Sbjct: 827  AQNLPAGVTLKEAGDAEIMAEVFSGFAMAMAAGLMLVLAVLVLLFHDILQPITILVSLPL 886

Query: 889  STVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILRT 948
            S  G F  LLI      + +  IG + L GIV  N I+L+D   + + +G+ R  A++  
Sbjct: 887  SVGGAFIALLITGNSVSMPVV-IGFLMLMGIVTKNAILLVDFAIESMHQGVDRFTALIEA 945

Query: 949  GVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFAT 1008
            G +R +P+++TT+  + G++P  +      + +   F AP       +A AV GGL  +T
Sbjct: 946  GRKRAQPIVMTTIAMVAGMVPSAM-----ALGEGGSFRAP-------MAIAVIGGLITST 993

Query: 1009 VLTLVLTPCL 1018
            VL+LV  P +
Sbjct: 994  VLSLVFVPAV 1003