Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., Multidrug resistance protein MdtB from Xanthobacter sp. DMC5

 Score =  273 bits (699), Expect = 4e-77
 Identities = 264/1030 (25%), Positives = 466/1030 (45%), Gaps = 61/1030 (5%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L+  +L+ G+  Y  +P    P V  P I VS S  G SP      +  PLE++   I G
Sbjct: 17   LMAALLLVGLVAYPLLPVAPLPQVDFPTIQVSASLPGASPETMASSVATPLERQFSQIAG 76

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            V +MT+T++ G A++ ++F++G  +  A  DV+ A++ A  +LP +   P        A+
Sbjct: 77   VTQMTSTSALGVAAITIQFDLGRSIDAAAQDVQSAINAASGQLPKNLPSPPTFRKINPAD 136

Query: 138  QPVLSVVLYGTVPERTTVLIARQ--LRDKLESFRQILSVDIAGDREEIVEIIVDPLLMES 195
             P+L + +   +   T +  +    L  ++     I  V I G+++  V + VDP  + +
Sbjct: 137  APILILSVQSDLYPLTKLDDSADTILAQQMSQIPGIAQVAITGEQKPAVRVQVDPAKIAA 196

Query: 196  YGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVITF 255
             G+   D+         V+AA  VD   G F       F    D   L      + V+ +
Sbjct: 197  LGMSLEDV-------RAVLAAATVDQPKGSFDGPAQG-FTIYADDQLLTALPWNEVVVAY 248

Query: 256  GDVATVR-----KSFRDPESFARL----DGKPAIVLDIKKRSGENIIETVELVKAVLGEA 306
             + A VR     ++   PE+ ARL    DGK  I L + K+ G N+I+ V+ VKA +   
Sbjct: 249  KNGAPVRIRDIGRAVDGPEN-ARLASWQDGKRGIQLIVFKQPGANVIDAVDRVKAAIPRL 307

Query: 307  QARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVGVS 365
            +A    P  + VK I D +E ++  ++D+Q  +L  I LVV VI A L  +  +++  V+
Sbjct: 308  EA--SLPPGITVKIIGDRTETIRASVDDVQLTMLITIALVVAVIFAFLRSLWATIIPSVT 365

Query: 366  IPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYR 425
            +P + +    V+ V G +++ + L AL +AVG +VD AIV+ E   R ++EGM   EA  
Sbjct: 366  VPMALIGTFAVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLENIYRYIEEGMPPFEAAL 425

Query: 426  DAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVL 485
              A  + + I + + + +A F P+L    + G  +    +T+  T+  S+V++L   P++
Sbjct: 426  KGAGEIGFTIISISLSLVAVFIPVLLMGGIVGRLLHEFAVTVTITILVSVVVSLTLTPMM 485

Query: 486  GSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLMSAA 545
             SLF + +   +  +A M A    D     G+ K Y + L   + H    L   L   AA
Sbjct: 486  CSLFLKNEHNVKHGRAYMAAEAFFD-----GMLKVYDTGLKWVLSHQFLTLMSLLATVAA 540

Query: 546  IAFAYGKAGLGAEFFPEVDPPF---FSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFES 602
              + Y    +   FFP+ D  F   FS   +     ++  K   + DI       +    
Sbjct: 541  TGWLY--VAIPKGFFPQQDTGFIQGFSEAAQDISFSAMTSKQMALLDIVARDPAIEHVSG 598

Query: 603  VYTRTGGDDEI--GVVQITPVDWQYRRSVKA--IIEELEQVTDTFPGVEIEYKFPD---- 654
                TGG   I  G V IT +  +  R V A  +I  L        G+ +  +       
Sbjct: 599  SVGATGGSQTINTGRVWIT-LKPRNERDVTADEVIHRLRPQLAKVEGIALFLQASQDINV 657

Query: 655  AGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDD 714
             G       +  +     D+L+    ++    ++ P LT+++ +         + I RD 
Sbjct: 658  GGRASRTQYQYTLQDANLDELNAWGPRMLAKLKSLPELTDVATDQQTNAPTVSLTIDRDT 717

Query: 715  ASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTA 774
            A+RF     ++ +T+       ++  Y    S   V IL   P    D G  D++ V++ 
Sbjct: 718  AARFGILPQVIDDTLYDAFGQRQVAQYFTQLSQYHV-ILEVDPKLQTDPGALDKVYVRSP 776

Query: 775  Q--GLVPLTNFAQIIPEQKQDTIHRVDGR-RVISVMADLKEGYNLALELPAIEQALRELN 831
            +    +PL+ F ++   +         G+   +++  +L  G  L   + AI+QA +E  
Sbjct: 777  RTGEEIPLSAFVKVDNSKTAYLSISHQGQFPAVTLSFNLAPGVALGQAVDAIKQAEQEAG 836

Query: 832  LPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTV 891
            +P ++    +G  +  ++S        + A+ A+ IIL   + SF     IL+++   + 
Sbjct: 837  MPQTLIGTFQGTAQAFQNSLRTQPYLILAAIVAVYIILGVLYESFIHPLTILSSL--PSA 894

Query: 892  GVFAGLLIFQKPFGI-IMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILRTGV 950
            GV A L+++   + + +++ IG++ L GIV  N I++ID      + G S E++I    +
Sbjct: 895  GVGALLVLYVAGYDLSVIALIGILLLIGIVKKNAIMMIDFALVREREGKSPEDSIYEACL 954

Query: 951  QRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVL 1010
             R RP+++TT+  +LG LP++L                 ++    L  A+ GGL  + VL
Sbjct: 955  IRFRPIMMTTMAALLGALPLMLG------------SGTGSELRRPLGFAIVGGLMVSQVL 1002

Query: 1011 TLVLTPCLLM 1020
            TL  TP + +
Sbjct: 1003 TLYTTPVVYL 1012