Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  264 bits (675), Expect = 2e-74
 Identities = 244/1075 (22%), Positives = 444/1075 (41%), Gaps = 97/1075 (9%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L   AL        L+V ++V G   Y  + ++  P  T   + V     G +     
Sbjct: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNV-----GVDLAKAMADVRDAVDLA 116
              +   LE+ ++      ++ + +  G + ++  FN+       ++A     VR  +   
Sbjct: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQII--FNIKDSSKSTEVANVWYTVRKKIGDM 132

Query: 117  KPKLPADSDEPTVNE-------VTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFR 169
            +  LPA    P  N+       V  A E    S     T        +A  +R +L   +
Sbjct: 133  RATLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKT--------LADDVRQQLLRVK 184

Query: 170  QILSVDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVK 229
             +  VD  G ++E V I +    +   GLD + +   +   N V +AG + +      V+
Sbjct: 185  DVAKVDQFGVQDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVR 244

Query: 230  VPSVFESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESF-ARLDGKPAIVLDIKKRS 288
            V   F S+  + ++PI+      I  GD+A + + + DP +      GK  I L +    
Sbjct: 245  VAGQFTSVDQLRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAK 304

Query: 289  GENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVV 348
            G +II   + +KA       R   P  + +  + D+   V   +N+    ++ A+ +V+ 
Sbjct: 305  GGDIIALGKALKATTATIDKR--LPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLA 362

Query: 349  VIIAILGV------------RTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAV 396
            V I  LG+            R  L+V ++IP       L +  FG+ ++ + L +LI+A+
Sbjct: 363  VSIISLGLHKGGRFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIAL 422

Query: 397  GMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVT 456
            G+LVD AI+  E   R+M+EG  ++ A   A    A P+   T  T A F P+     VT
Sbjct: 423  GLLVDDAIIAVEMMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVT 482

Query: 457  GEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATG 516
            GE+   +    +  L  S ++++ FVP LG+L  +            V  H+ D      
Sbjct: 483  GEYTFAIFAVTVIALVLSWIVSVYFVPYLGTLLLK------------VKAHDPDAPPHEM 530

Query: 517  ITKAYYSTLAIAIRHPIKILCGALLMSAAIAFAYGKAGLG---AEFFPEVDPPFFSVKVR 573
               A+Y+    A+   ++    A + +  + FA G  G+G    +FFP+   P   V + 
Sbjct: 531  FDSAFYNAFRRAVNWCVEHR-WATIGATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIW 589

Query: 574  SYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGG--------------DDEIGVVQIT 619
                 S    + +   +E+  +      +V T  G                  +  + + 
Sbjct: 590  FPEGTSFAANEEVAKRVEKRFMEEAGVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVL 649

Query: 620  PVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAA 679
              D + R +++  + +L  +   FP V    K    GPPV + ++  +       L   A
Sbjct: 650  AKDLKVRETLRLKLPQL--LAQEFPEVRGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHA 707

Query: 680  QQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIG 739
             +V+     NP +  ++DN ++     ++++ +  A      +  +    + + +G  +G
Sbjct: 708  DEVKAVLRDNPNMRGVNDNWNESVKVIRLEVDQAKARALGVTSQAIAQASKTMFSGTTVG 767

Query: 740  DYLPDDSDEEVDILVRY-PSEYRDIGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHR 797
             Y   ++D  +DI++R  P E + I       + T+ G  +PLT  A+ +   +   + R
Sbjct: 768  QY--RENDLLIDIVLRQAPDERQAISDIGNAYIPTSSGRSIPLTQIAKPVFTWEPGVMWR 825

Query: 798  VDGRRVISVMADLKEGYNLALELPAIEQALRELNL------PSSVEFRIRGQNEEQEHSA 851
             +    I+V  D+ EG   A     +   LREL               + G  EE    +
Sbjct: 826  ENRDYAITVQGDVIEGLQGATVTTQLLPKLRELEAGWAAAGQGGYRVEVAGAAEESSKGS 885

Query: 852  VFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGI 911
              +     + L  +  +L+ Q +SF ++ L+         GV   LL+  +PFG + + +
Sbjct: 886  ASIVAGVPIMLFLVFTLLMLQLHSFSRSLLVFITGPMGIAGVAGALLVLNRPFGFV-ALL 944

Query: 912  GVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMV 971
            GVIAL G++  N ++LID        G+   +AI+ + V+RLRP++LT    +L ++P+ 
Sbjct: 945  GVIALMGMIQRNAVILIDQIEIDRAAGVPAWDAIVESAVRRLRPIVLTAAAAVLAMIPL- 1003

Query: 972  LEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPCLLMLGRRRK 1026
                              + +W  +A A+ GGL  ATVLTL+  P +     R K
Sbjct: 1004 ----------------SRSVFWGPMAVAIMGGLIVATVLTLLALPAMYAAAFRVK 1042