Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

 Score =  283 bits (725), Expect = 3e-80
 Identities = 259/1075 (24%), Positives = 473/1075 (44%), Gaps = 92/1075 (8%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L+DA+L     +L     ++  GV  +  +P ++ PDVT   + +     G++  D E+L
Sbjct: 5    LVDASLRYKVLVLVFFAVLVGLGVQAFRNVPVDAFPDVTPVQVNIYTESPGLAAEDVEKL 64

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            +  P+E  M  + GV+E+ + +  G + V + F   VD+  A   V + +  AK +LP  
Sbjct: 65   LTTPIEGAMAGLPGVEEVRSVSLFGLSYVGVYFKDDVDIYFARRLVGEKLQEAKGRLPQG 124

Query: 124  SDEPTVNE----------VTLAAEQPVLSVVLYGTVPERTTVLIARQLR--DKLESFRQI 171
              EP +             T+ +E   +S +   T+ + T  LI R     D + S+   
Sbjct: 125  YGEPVLGPNSSGLGQVFWYTVESEDKKMSTMDLRTLHDWTVRLILRTAPGVDDIVSW--- 181

Query: 172  LSVDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVP 231
                  G  ++  ++ +DP  +  Y +   ++   +  NN+ V    ++ G  +F V+  
Sbjct: 182  ------GGEQKQFQVQIDPRKLIQYSVSFKEVMERLTANNKQVGGQSINLGAEQFLVRGL 235

Query: 232  SVFESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGEN 291
             +  + KD+ ++ I       +   +VA V+++          DGK A++     R  EN
Sbjct: 236  GLVGTTKDIEQIVIAERNGAPVYVRNVAQVKEAPAPRFGAVTRDGKEAVLGIALARVNEN 295

Query: 292  IIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVII 351
                V+ VKA L  AQA    P  + ++ ++D +E VK  LN  +++++   ILV V++ 
Sbjct: 296  AKNVVDAVKAKLAVAQAA--LPKGVTLQPVYDRTELVKKALNTAESSLVEGAILVAVILF 353

Query: 352  AILG-VRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFA 410
              LG  R++++V +++P + L   +++  FG++ N++ L  L +  GM+VDGA+V+ E A
Sbjct: 354  LFLGEFRSAIVVVITLPMAMLIAFILMQQFGVSANLMSLAGLAIGTGMMVDGAVVMVENA 413

Query: 411  DRRMQEG------MHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLP 464
             R +         + ++    +AA+ +  PI  +    +  F PL     + G+  K + 
Sbjct: 414  FRLLAHAKESGKPIQKTHLILEAAREVVNPIAFAILIIIVVFLPLFSLTGLEGKLFKPMA 473

Query: 465  LTLMATLTASLVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYST 524
             T+   +  SL+++L  VPVL ++  +P++       R                + Y   
Sbjct: 474  YTITFAMAGSLLLSLTLVPVLAAMILKPKEEKDTFLVRRA-------------KRIYLPL 520

Query: 525  LAIAIRHPIKILCGA--LLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNE 582
            L  A+     ++  A  LL+++   F +    LG EF P++       +V      SL+E
Sbjct: 521  LDWALERKRLVVGSAIVLLLASLALFPF----LGKEFMPQLQEGTIQFRVTGIPSTSLDE 576

Query: 583  KDRIMSDIEQVMLGHDEFESVYT--------RTGGDDEIGVVQIT---------PVDWQY 625
              R+ +++   +    +F  V +          G   ++  +++          P    Y
Sbjct: 577  SIRVSNEVSAAL--RKQFPQVRSVLATIGRAEGGETTDVNYMELNLDTKPAEEWPEKISY 634

Query: 626  RRSVKAIIEELEQVTDT--FPGVE-IEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQV 682
             +    + E LE+V  T  F   + I+ +  +    V   L +++       LD+   ++
Sbjct: 635  GKLASDMQEALEKVVPTVVFGATQPIQSRVEELISGVRATLALKLYGEDLATLDRLTGKI 694

Query: 683  RLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYL 742
            +      P + +LS   +K      I + RD A+R+  +A  +   VQ    G  +   +
Sbjct: 695  QGVLGKIPGIADLSAEANKGKPQLIIKVNRDAAARYGINADEILEVVQSGIGGSAVSTLI 754

Query: 743  PDDSDEEVDILVRYPSEYR-DIGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDG 800
              D  +  +I VR   E+R        + ++T  G LVP +  A I  ++    I R   
Sbjct: 755  --DGTKRFEIAVRLSDEFRVSPAAIASIPIRTGGGALVPFSQVASIELDEGYSFIRRESL 812

Query: 801  RRVISVMADLKEGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMV 860
            +R   +  D+K     +    A  Q   ++ LP+       G  E Q+ +   L     +
Sbjct: 813  QRYSVLQMDVKGRDVDSFVKEADTQLKAQVELPTGYWIEWGGSFENQQRAMARLGVIVPL 872

Query: 861  ALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIV 920
             +  + I+L T FNS   A LI+  V F+ +G   GL +    +  + S IG IA+ G+ 
Sbjct: 873  TIGLIFILLYTAFNSVRHATLIIANVPFAIIGGIVGLFV-SGQYLSVPSAIGFIAVFGVA 931

Query: 921  VNNNIVLIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIIN 980
            + N IV++   N L ++GL   EA+ +    RLRPVL+T    ILGL+PM+L   +    
Sbjct: 932  MLNGIVMVTFLNDLRRQGLPIREAVQQGAALRLRPVLMTASVAILGLIPMLLSTGVGAET 991

Query: 981  QKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPCLL----MLGRRRKGVSED 1031
            Q+             LAT V GGL  +T LTL++ P +         RRK  +E+
Sbjct: 992  QR------------PLATVVVGGLFTSTALTLLILPLMYEWAEQRAERRKAKTEE 1034