Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  259 bits (663), Expect = 5e-73
 Identities = 251/1056 (23%), Positives = 480/1056 (45%), Gaps = 75/1056 (7%)

Query: 13   RTMLTLLV--FILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQ 70
            R +L L+V   IL+ G      +P    P      + ++  + G SP   +  + +P+ Q
Sbjct: 10   RPVLALVVSTLILLLGARALGDLPVRQYPLTESTTLTITTQYPGASPELMQGFVTQPIAQ 69

Query: 71   EMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVN 130
             + +IE V  ++++++ G + + +   +  D  +A+      +   K +LPA++ +P + 
Sbjct: 70   AVATIENVDYLSSSSTLGRSVISVRMKLNADANQALTQAMAQISQVKYRLPAEAFDPVI- 128

Query: 131  EVTLAAEQPVLSVVLYG--TVP-ERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEII 187
             +  + E   ++ V +   T+P    T  ++R ++ +  S   +  V+++G +   + + 
Sbjct: 129  -LKSSGEATAVAYVGFSSKTMPMPALTDYLSRVVQPQFASITGVSGVEVSGGQTLAMRVW 187

Query: 188  VDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKV 247
            +DP  M + G+   ++ + +  NN   A G V   Y   +++V +   ++ +  ++ +K 
Sbjct: 188  LDPNRMAARGISAGELADALRQNNVQAAPGQVKGLYVVSNIRVNTDLVNVAEFRDMVVKR 247

Query: 248  EGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQ 307
            +G  ++  GDVATV       +S A +DG PAI L ++     N +  V+ ++ +L    
Sbjct: 248  DGDAIVRLGDVATVELGAASADSSATMDGVPAIYLGLQAAPNGNPLVIVKRIRELL--PG 305

Query: 308  ARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSLLVGVSI 366
             + + P  + V+  ++ +  ++  ++++Q  +L AI +VV+VI   LG VR  L+  V+I
Sbjct: 306  IKQNLPPGVEVQLPFELARFIEASIDEVQKTLLEAIAIVVIVIFLCLGSVRAVLIPVVTI 365

Query: 367  PGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRD 426
            P S L    ++ +FG ++N++ L A+++A+G++VD AIVV E   R ++EG  R +A   
Sbjct: 366  PLSMLGAAALMLLFGFSINLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSRVQAALI 425

Query: 427  AAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLG 486
             A+ +A P+ A T T  A +AP+     +TG   K    TL   +  S V+AL   PV+ 
Sbjct: 426  GAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIALTLSPVMS 485

Query: 487  SLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLMSAAI 546
            S F  PQ  T +  AR  A        ATG    Y   L +++ H       A L+ A++
Sbjct: 486  S-FLLPQDTTGSRMAR--AAEAFFHKLATG----YGRLLDVSLHHRWVTGVFAALVLASL 538

Query: 547  AFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTR 606
             F Y  A    E  P  D       ++S    +++  ++     ++V     E    +  
Sbjct: 539  PFLYNSA--QRELAPGEDQAMVLTAIKSPQHANIDYVEKFGKKWDEVFAALPENTGRWLI 596

Query: 607  TGGD---DEIGVVQITPVDWQYR-RSVKAIIEELE-QVTDTFPGVEIEYKFPDAGPPVEH 661
             G D   + IG VQ++  DW+ R R+   I  + + ++ D        ++ P   P    
Sbjct: 597  NGSDGVSNSIGGVQLS--DWKDRKRNADQIQGDTQGRMNDVEGSSVFAFQLPSL-PGSTG 653

Query: 662  DLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSK------------PGIDWKID 709
             L +++  R A D        R   EA  AL   + +  K            P ++ ++D
Sbjct: 654  GLPVQMVIRSAAD-------HRTVFEAMEALKKSARDSGKFIVVDSDLEFNNPTVEIRVD 706

Query: 710  IRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYR-DIGRFDQ 768
              R  A+        +G+T+  +     +  +  D      D++ + P E R       +
Sbjct: 707  --RAKANSLGVTMKSIGDTLAVLVGENYVNRFGMD--GRSYDVIPQSPREQRLTAEALSR 762

Query: 769  LRVKTAQGL-VPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQAL 827
              VK+A G  VPL N  Q+      + + + +     +  A    G  +   +  + +  
Sbjct: 763  YFVKSASGQPVPLANLVQLSTSVGPNKLTQFNQLNASTFQAIPAPGVTMGDAVAFLSEEA 822

Query: 828  RELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVI 887
            ++L    S +++   +   QE SA+ +  AF+ A+  + ++L  Q+ S     +IL +V 
Sbjct: 823  KKLPAGFSYDWQSDARQFTQEGSALVM--AFVFAIVVIYLVLAAQYESLRDPLIILISVP 880

Query: 888  FSTVGVFAGLLIFQKPFGI--IMSGIGVIALAGIVVNNNIVLIDTYNQL-LKRGLSREEA 944
             S  G    L +    FG   I + IG++ L G++  + I++++  N++ + +GL R  +
Sbjct: 881  MSICGALVPLAL---GFGTINIYTQIGLVTLIGLISKHGILMVEFANEIQMNKGLDRRAS 937

Query: 945  ILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGL 1004
            I      RLRP+L+TT   ++GL+P++              GA +   +S +   +  G+
Sbjct: 938  IEEAARIRLRPILMTTAAMVVGLVPLLFAS-----------GAGANSRFS-IGLVIVVGM 985

Query: 1005 AFATVLTLVLTP---CLLMLGRRRKGVSEDEAPQDA 1037
               T+ TL + P    LL    R  G S+  A  +A
Sbjct: 986  LVGTLFTLFVLPTMYTLLARDHRAAGRSQRAAELEA 1021