Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1016 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  261 bits (668), Expect = 1e-73
 Identities = 242/1047 (23%), Positives = 471/1047 (44%), Gaps = 91/1047 (8%)

Query: 9    LSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPL 68
            L++  ++  L+   L+ G  +YL + +   P+  I    +   + G +  +    +   +
Sbjct: 8    LAKRTSVWVLIALTLIGGYISYLKLGRFEDPEFVIRQAVIVTPYPGATAQEVSDEVTDVI 67

Query: 69   EQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDE-- 126
            E  +++++ +KE+ + + +G + V +E  + ++ AK+ A ++   D  + K+ AD+    
Sbjct: 68   EGAVQALQELKEVKSVSMQGRSEVTVE--IKLEFAKSSAQLQQVWDKLRRKV-ADAQRQL 124

Query: 127  -PTVNEVTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQ-------ILSVDIAG 178
             P      +  +   +  + Y    E  +    +QL+D +++ R+       +       
Sbjct: 125  PPGAGASIVNDDFSDVYALFYAVTGEGFS---DKQLQDYVDTLRRELVLVPGVAKAATLA 181

Query: 179  DREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLK 238
            +++E + I +    M  +GL    +  ++   + V  AG VD    R  V   S   SL 
Sbjct: 182  EQQEAIFIEMSSERMAEFGLSVERVLQVLQKQSLVTVAGSVDAQQMRIPVIPKSNISSLA 241

Query: 239  DVLELPIKV-EGKQVITFGDVATVRKSFRDPESFA-RLDGKPAIVLDIKKRSGENIIETV 296
            D+  L + V     V+  GD+A + + + +P S   R +G+ AI   I   +G N++E  
Sbjct: 242  DLTNLQVAVGSNNAVVRLGDIANISRGYTEPASMLMRYNGQRAIGFGISNVTGGNVVEMG 301

Query: 297  ELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGV 356
            + VKA L E +++   P  + +  I  +S+ V+  + +  +N+++A+ +V VV++  +GV
Sbjct: 302  DAVKARLAELESQR--PLGMDLHVISMQSDSVRASVANFIDNLIAAVAIVFVVLLLFMGV 359

Query: 357  RTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQE 416
            R+ +++G  +  +    L V+ +  + +  + L ALI+A+GMLVD AIVVT+    R Q+
Sbjct: 360  RSGVIIGFVLLLTVAGTLCVMLIDDIAMQRISLGALIIALGMLVDNAIVVTDGVLVRFQQ 419

Query: 417  --GMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTAS 474
                 + +   +      WP+   T   + AF+ +   P   GE+   L   ++ ++  S
Sbjct: 420  EPNADKQQVVSEVVNATKWPLLGGTVVGIFAFSAIGLSPSDMGEYAGSLFWVILYSMFLS 479

Query: 475  LVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIK 534
             V A+   P+L   F R +  T+              ++ + +   Y + L   + H  +
Sbjct: 480  WVFAVTVTPMLCHDFLRVKAPTKE-------------AKPSKLVTGYKAVLQWVLSH--R 524

Query: 535  ILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVM 594
            ++  A+L+   +A  +G   +   F PE   P F V V       +   +++++ IE+ +
Sbjct: 525  VVSCAMLLGTLVAAVWGAQFIPPGFMPESQRPQFVVDVYLPQGSDIRRTEQVVASIEKDV 584

Query: 595  LGHDEFESVYTRTGGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGV-----EIE 649
               D   ++ +  GG     ++  +P       S   ++ +++  T   P V     E++
Sbjct: 585  TQKDGITNITSFIGGGGLRFMLTYSPE--ARNPSYGQLLIDIDDYTKIAPLVGELQNELD 642

Query: 650  YKFPDAGPPVEHDL-------EIEISARVADD--LDKAAQQVRLWAEANPALTNLSDNGS 700
             K+PDA   V   +       +IE   +  D   L + A+Q +     +P L  + D   
Sbjct: 643  AKYPDASIKVWKFMLGRGGGKKIEAGFKGPDSHVLRQLAEQAKAIMHNDPNLIAVQD--- 699

Query: 701  KPGIDWKIDIRRDDASRFAADATLVGNTVQFVT-------NGLKIGDYLPDDSDEEVDIL 753
                DW+  +        A +A  +G T Q ++       NG  +G Y   + ++ + ++
Sbjct: 700  ----DWRQQVPVLQPVYSAQEAQRLGLTTQEISAAIAQTLNGRNVGVY--REGNDLIPLM 753

Query: 754  VRYPSEYRDIGR-FDQLRVKTAQG--LVPLTNFAQIIPEQKQDT-IHRVDGRRVISVMAD 809
            VR P   R   R  +   V +AQ    +P++     +    QD  + R++    I V AD
Sbjct: 754  VRAPENERHHERAIENSEVFSAQAGRYIPVSQLVDSVDTVYQDALLRRINRMPTILVQAD 813

Query: 810  LKEGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIIL 869
               G   A     + + + ++ LP+  E    G+ +  + +   L  +     AAM + +
Sbjct: 814  PAPGVMTADAFNNVREKIEQIELPAGYELIWYGEYKASKDANEGLALSAPYGFAAMILAV 873

Query: 870  ITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLID 929
            +  FN+  Q  +I     F+ VGV  GL+ FQ PF   M+ +G ++L G++V N IVL+D
Sbjct: 874  VFMFNALRQPLVIWMTAPFAVVGVTIGLIAFQTPFE-FMAILGFLSLIGMMVKNAIVLVD 932

Query: 930  TYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPS 989
              +  ++ G     AI+   V R RPVLL   TTILG+ P++++                
Sbjct: 933  QADAEIRAGKEAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVD---------------- 976

Query: 990  TQWWSQLATAVAGGLAFATVLTLVLTP 1016
              ++  +A  +  GL FAT+LTLV+ P
Sbjct: 977  -PFFKSMAVTIMFGLLFATILTLVVIP 1002



 Score = 58.2 bits (139), Expect = 3e-12
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 27/253 (10%)

Query: 243  LPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAV 302
            +P+      V T    A +R+  R P    + D  P ++      +    IE +EL    
Sbjct: 781  IPVSQLVDSVDTVYQDALLRRINRMPTILVQADPAPGVMTADAFNNVREKIEQIELPAGY 840

Query: 303  ----LGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRT 358
                 GE +A  D    L +   +                  +A+IL VV +   L  R 
Sbjct: 841  ELIWYGEYKASKDANEGLALSAPYG----------------FAAMILAVVFMFNAL--RQ 882

Query: 359  SLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGM 418
             L++ ++ P + +   + L  F      + +   +  +GM+V  AIV+ + AD  ++ G 
Sbjct: 883  PLVIWMTAPFAVVGVTIGLIAFQTPFEFMAILGFLSLIGMMVKNAIVLVDQADAEIRAGK 942

Query: 419  HRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMA 478
                A  DAA   A P+     TT+   APLL  P     F K + +T+M  L  + ++ 
Sbjct: 943  EAYFAIIDAAVSRARPVLLGAFTTILGVAPLLVDP-----FFKSMAVTIMFGLLFATILT 997

Query: 479  LLFVPVLGSLFGR 491
            L+ +P+  ++  R
Sbjct: 998  LVVIPLFYAVLFR 1010