Pairwise Alignments
Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1034 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2
Score = 270 bits (691), Expect = 3e-76
Identities = 245/1032 (23%), Positives = 463/1032 (44%), Gaps = 51/1032 (4%)
Query: 4 LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
L D ++ R + V + + G+ Y ++ PD PI+ V ++ G + S E
Sbjct: 3 LSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVETR 62
Query: 64 IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
I + +E + ++G++ +T+T+ +G +++ +EF+ D+ A DVRD V LP D
Sbjct: 63 ITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLPED 122
Query: 124 SDEPTVNEVTLAAEQPV-LSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREE 182
+ P + +V A + L+ G P + + + R + D+ + + V I G+
Sbjct: 123 ALAPEIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGEARP 182
Query: 183 IVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLE 242
I + + ++GL +D+ + N + AG ++ +++V F + +
Sbjct: 183 STRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQFAQ 242
Query: 243 LPI-KVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKA 301
L + + E + GDVA + + +P S R + AI + I ++SG N +E + KA
Sbjct: 243 LVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQKAKA 302
Query: 302 VLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSL 360
++ E + P + V DES ++ ++++ + ++ A +LV++VI LG VR ++
Sbjct: 303 LIKELEPT--LPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRATI 360
Query: 361 LVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHR 420
+ V++P L V+ + GL++N++ L A ++A+G++VD AIVV E R+++G
Sbjct: 361 VPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDDP 420
Query: 421 SEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALL 480
A +++ + I ++T A F P++F TG + L + ++A + S ++L
Sbjct: 421 LVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISLS 480
Query: 481 FVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGAL 540
P+L S + + A + R+ + F + I Y L ++ P+ L G
Sbjct: 481 LAPMLCS-----KLLKNAERGRLARWVDDRFQR---IEHGYGRWLDWTLKKPLMPLLGVA 532
Query: 541 LMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQ--VMLGHD 598
+ F + + L AE P D V + + M IE L D
Sbjct: 533 IFLGVAFFLFTR--LPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRKD 590
Query: 599 -EFESVYTRTGG------DDEIGVVQITPVDWQYRRSVKA-IIEELEQVTDTFPGVEIEY 650
+++ RT G D G V W+ R A + + +V PGV
Sbjct: 591 GTLQNLVIRTPGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVR-GN 649
Query: 651 KFPDAGPPVEHDLEIEI--SARVADDLDKAAQQVRLWAEANPALTNLSDN--GSKPGIDW 706
P +G L + I + + L A ++ L A + P L NL + +KP +
Sbjct: 650 AAPRSGLGRGRGLPVNIVLAGSTYEGLVAARDRIMLAAASYPGLINLDSDYKETKPQMRI 709
Query: 707 KIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRD-IGR 765
+ D++R A V +Q + ++ Y+ D EE +LV+ + R +
Sbjct: 710 ETDLQR--AGDLGVSVNDVSQALQSLLGSRRVTTYV--DRGEEYRVLVQAERDGRQTLAD 765
Query: 766 FDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIE 824
++++V++ +G LVPL+ + ++R + R I++ A L G +L L +E
Sbjct: 766 LERIQVRSRRGVLVPLSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLE 825
Query: 825 QALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILT 884
R+ P + RG+++ + + F + + + ++L QF SF +I+
Sbjct: 826 DQARQ--SPEVLAIGYRGESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIA 883
Query: 885 AVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEA 944
V + G GL I + S IG++ L G+ N I++++ NQL G+ EA
Sbjct: 884 TVPLAVAGGALGLAITGGSIN-LYSQIGIVMLVGLAAKNGILIVEFANQLRDEGMEIAEA 942
Query: 945 ILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGL 1004
I +RLRP+L+T++ T++G +P+VL G + + G+
Sbjct: 943 IREAAKRRLRPILMTSIATVIGAVPLVLR------------GGAGAAARHSIGVVIVFGV 990
Query: 1005 AFATVLTLVLTP 1016
+ AT++TL L P
Sbjct: 991 SLATLITLFLIP 1002
Score = 61.2 bits (147), Expect = 4e-13
Identities = 57/258 (22%), Positives = 114/258 (44%), Gaps = 17/258 (6%)
Query: 235 ESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIE 294
++L D+ + ++ ++ V TVR+ P R + AI L G ++ +
Sbjct: 761 QTLADLERIQVRSRRGVLVPLSAVVTVRE-VAGPRQLNRYNKLRAITLTAALAPGTSLGQ 819
Query: 295 TVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL 354
+ + E QAR +L ES+ L + +I L ++++ +L
Sbjct: 820 GLAFL-----EDQARQS--PEVLAIGYRGESQS----LRETGGSIWIVFGLTILIVYLLL 868
Query: 355 GVRTSLLV--GV---SIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEF 409
+ + GV ++P + G L LA+ G ++N+ ++M VG+ I++ EF
Sbjct: 869 AAQFESFIHPGVIIATVPLAVAGGALGLAITGGSINLYSQIGIVMLVGLAAKNGILIVEF 928
Query: 410 ADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMA 469
A++ EGM +EA R+AAKR PI ++ T+ PL+ + + ++
Sbjct: 929 ANQLRDEGMEIAEAIREAAKRRLRPILMTSIATVIGAVPLVLRGGAGAAARHSIGVVIVF 988
Query: 470 TLTASLVMALLFVPVLGS 487
++ + ++ L +P+ S
Sbjct: 989 GVSLATLITLFLIPIFYS 1006