Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  277 bits (708), Expect = 3e-78
 Identities = 249/1052 (23%), Positives = 466/1052 (44%), Gaps = 88/1052 (8%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L D AL     +  L+   L+ G+ +Y  + +E  P  TI  + +     G +  +  
Sbjct: 5    FNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETL 64

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHASVVL---EFNVGVDLAKAMADVRDAVDLAKP 118
              +   +E+++  ++ +    +    G ++V +   +     D+      VR  +   + 
Sbjct: 65   YQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG 124

Query: 119  KLPADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFR-------QI 171
            + PA    P  N+     E   +   +Y    +  T+   RQLRD +E  R        I
Sbjct: 125  EFPAGIQGPGFND-----EFGDVFGSIYAFTADGLTL---RQLRDYVEQARAEVRDVPNI 176

Query: 172  LSVDIAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVP 231
              +++ G ++E++ +      + + G+DQ  +   +   N V  AG ++ G  R SV+  
Sbjct: 177  GKIELVGTQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTS 236

Query: 232  SVFESLKDVLELPIKVEGKQVITFGDVATVRKSFRDPES-FARLDGKPAIVLDIKKRSGE 290
              F S KD+  + +++  +      D+A + + + DP S   R +G+ AI L I  ++G 
Sbjct: 237  GQFASEKDLQTVNLRINDR-FFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGG 295

Query: 291  NIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVI 350
            NI      +K  +   Q   D P  + V T+ D++  VK  +    + +  A+++V+ V 
Sbjct: 296  NIQVFGAALKKRMD--QVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVS 353

Query: 351  IAILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFA 410
               LGVR  L+V  SIP       + +   G+T+  + L ALI+A+G+LVD A++  E  
Sbjct: 354  FVSLGVRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVM 413

Query: 411  DRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMAT 470
              R++ G  + +A   A    A+P+   T  T+A F P+       GE+   L   +   
Sbjct: 414  VTRLEMGESKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVA 473

Query: 471  LTASLVMALLFVPVLG--SLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIA 528
            L  S V+A+ F PVLG   L G   K  +A   R              + +A+   L   
Sbjct: 474  LIVSWVVAVFFAPVLGVHILKGDKLKAHEAEPGR--------------VGRAFEGGLLWC 519

Query: 529  IRHPIKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMS 588
            +R+    + G +++ A   F      +  +FFP  D P   V +    + S+ E  +++ 
Sbjct: 520  MRNRWLTIIGTVVLFALAIFC--MRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVD 577

Query: 589  DIEQVMLGHDEFESVYTRTGGDDEIGVVQI-TPVDWQYRRSV--------------KAII 633
              E  +    +     T  G     G ++   P+D Q +                 +A++
Sbjct: 578  RFEARIKDDPDLVHWSTYIGQ----GAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMM 633

Query: 634  EELEQVT-DTFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPAL 692
            + L+++  + F GV    +  + GPPV   ++  +S    D + K A ++    + N  +
Sbjct: 634  DRLQKILHEEFVGVGTNVQSLEMGPPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHI 693

Query: 693  TNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDI 752
              +  + ++PG   +++I +D A +    +  V N +  + +G++I     +D+   VD+
Sbjct: 694  GEMIYDWNEPGKVLRVEIAQDKARQLGLSSEDVANVMNSIVSGVQITQV--NDNIYLVDV 751

Query: 753  LVR-YPSEYRDIGRFDQLRVKTAQGL-VPLTNFAQIIPEQKQDTIHRVDGRRVISVMADL 810
            + R   SE         L++ T  G  +PL +FA +  E +Q  + R D +  I++ A +
Sbjct: 752  VARAEDSERGSPDTLQNLQILTPNGTSIPLLSFATVRYELEQPLVWRRDRKPTITIKASV 811

Query: 811  K---EGYNLALEL-PAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMA 866
                +  +L  +L P I++   +  LP   E    G  EE   +   + K   + L  MA
Sbjct: 812  NGEIQPTDLVAQLKPKIDEFASK--LPVGFEVATGGTVEESAKAQGPIRKVIPLMLFLMA 869

Query: 867  IILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIV 926
              L+ Q +S  + FL+++      +GV   L+    P G + + +G++ALAGI++ N+++
Sbjct: 870  TFLMIQLHSVQKLFLVVSVAPLGLIGVVLALVPTGTPMGFV-AILGILALAGIIIRNSVI 928

Query: 927  LIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFG 986
            L+   ++   +GLS  +A++     R RP+LLT     LG++P+  E+            
Sbjct: 929  LVTQIDEFEAQGLSPWDAVVEATNHRRRPILLTAAAASLGMIPIAREV------------ 976

Query: 987  APSTQWWSQLATAVAGGLAFATVLTLVLTPCL 1018
                 +W  +A A+ GG+  AT+LTL+  P L
Sbjct: 977  -----FWGPMAYAMIGGIIVATLLTLLFLPAL 1003