Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  293 bits (749), Expect = 6e-83
 Identities = 269/1046 (25%), Positives = 472/1046 (45%), Gaps = 55/1046 (5%)

Query: 14   TMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMR 73
            TML  L  +L+ GV+  L +P    P +  P+I VS +  G SP      +  PLE+++ 
Sbjct: 14   TMLLSLAIMLLGGVSFGL-LPVAPLPQMDFPVIVVSANLSGASPEVMASTVATPLERKLG 72

Query: 74   SIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDE-PTVNEV 132
            SI GV  +T+++++G   VV+ F +G D+  A  +V+ A++  +  LP+     PT  ++
Sbjct: 73   SIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPSGMRSMPTYKKI 132

Query: 133  TLAAEQPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDP 190
               ++ P++ + L   V ++  +  L    L   L     +  V I G     V I V+P
Sbjct: 133  N-PSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGSSLPAVRIAVEP 191

Query: 191  LLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGK 250
             L+  Y L   ++   ++  N+    GFV+     + V+     ES KD   + I+ +  
Sbjct: 192  QLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKDYEPVVIRQQNG 251

Query: 251  QVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARD 310
             ++   DVATV     +  +    + + A++L + +++G NIIETV+ +KA L   Q+  
Sbjct: 252  TILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSL- 310

Query: 311  DWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTSLLVGVSIPGS 369
              P ++ +    D S  +K  L + ++ +L A++LV++V+   LG +R SL+  +++P S
Sbjct: 311  -LPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVS 369

Query: 370  FLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAK 429
             +    V+ V G ++N + L ALI+A G++VD AIVV E   R ++ G    +A    AK
Sbjct: 370  LVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPPMKAAFLGAK 429

Query: 430  RMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLF 489
             + + + +   + +A F  +LF   +     +   +TL A +  SLV++L   P+L + +
Sbjct: 430  EVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARW 489

Query: 490  GRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLMSAAIAFA 549
             +PQ      QA    L     +    +  AY  +L  A+RH  ++   +LL +  I  A
Sbjct: 490  LKPQ------QAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHK-RLTLLSLLATIGINIA 542

Query: 550  YGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGG 609
                 +     P+ D       +R    LS       M    + +L     +SV    GG
Sbjct: 543  L-YVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAGFIGG 601

Query: 610  ----DDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPVEHDLEI 665
                ++   +V++ P+  + +   + +IE L +     PG  + +   D    +      
Sbjct: 602  NSGTNNAFVLVRLKPIS-ERKIDAQKVIERLRKELPKVPGGRL-FLMADQDLQLGGGGRD 659

Query: 666  EISARVADDLDKA-AQQVRLW-------AEANPALTNLSDNGSKPGIDWKIDIRRDDASR 717
            + S++    L       +R W         A P LT +            + + RD A R
Sbjct: 660  QTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRDQAKR 719

Query: 718  FAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYR-DIGRFDQLRVKTAQG 776
               D  +V   +    +  +I      DS  +  +++    +Y  D    +Q++V TA G
Sbjct: 720  LGIDMDMVTAVLNNAYSQRQISTIY--DSLNQYQVVLEINPKYAWDPSTLEQVQVITADG 777

Query: 777  L-VPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLPSS 835
              VPL+  A        D +          +  D+ EGY+    + A+E+A+ +L LP  
Sbjct: 778  ARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVAKLGLPEE 837

Query: 836  VEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFA 895
            V  ++ G  +    +        + AL  + ++L   + S+     IL+ +  + VG   
Sbjct: 838  VIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPSAGVGALL 897

Query: 896  GLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLK-RGLSREEAILRTGVQRLR 954
             L +    F +I S +G+  L G+V  N I++ID   QL + +G S EE+I R  + RLR
Sbjct: 898  ALYVTGGEFSLI-SLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRACLLRLR 956

Query: 955  PVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVL 1014
            P+L+TT+  ILG LP++L              A   +    L   + GGL F+ +LTL  
Sbjct: 957  PILMTTLAAILGALPLLLSQ------------AEGAEMRQPLGLTIIGGLVFSQILTLYT 1004

Query: 1015 TPCL-LMLGRRR------KGVSEDEA 1033
            TP + L L R R      +GV  D A
Sbjct: 1005 TPVVYLYLDRLRHRFNRWRGVRTDAA 1030