Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  272 bits (696), Expect = 8e-77
 Identities = 237/1031 (22%), Positives = 466/1031 (45%), Gaps = 49/1031 (4%)

Query: 6    DAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIV 65
            D  + R      + + IL+ G   +  +     P +   +I V+ ++ G +    +  I 
Sbjct: 5    DTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYIT 64

Query: 66   RPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSD 125
            +PL+Q + S EG+  MT+ + +  + + +   +G D  +   ++    +  + KLP DS+
Sbjct: 65   QPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLPQDSE 124

Query: 126  EPTVNEVTLAAEQPVLSVVLYGTVP---ERTTVLIARQLRDKLESFRQILSVDIAGDREE 182
            +P +++   AA+   L  V + +      + T  ++R ++ KL +   +   +I G++  
Sbjct: 125  DPVLSKE--AADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVF 182

Query: 183  IVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLE 242
             + + +DP+ +  +GL  +D+ N +   N + AAG V   Y   SV   +  +S +    
Sbjct: 183  AMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAFAA 242

Query: 243  LPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAV 302
            LP+K  G   +  GDVA V     + ++ +  DG P++ + IK     N ++ ++ V+ +
Sbjct: 243  LPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRI 302

Query: 303  LGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLV 362
            + E +++   P+ L V   +D +  ++  ++++   +  A+++V+VV+   LG   S+L+
Sbjct: 303  MPELESQ--LPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLI 360

Query: 363  GV-SIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRS 421
             V +IP S +  L  + + G ++N++ L A+++A+G++VD AIVV E   R M+EG    
Sbjct: 361  PVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPF 420

Query: 422  EAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLF 481
            +A  + A+ +A P+ + T T  A +AP+ F   +TG   K   LTL   +  S ++AL  
Sbjct: 421  DAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTL 480

Query: 482  VPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALL 541
             P++ +L  R ++       R+  L      +   +  A   +  + +   + ILC   L
Sbjct: 481  SPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILC---L 537

Query: 542  MSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFE 601
            +   + F         E  P  D     +   S    +L+  +        +     E+ 
Sbjct: 538  IPVLLKFTQN------ELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPEYY 591

Query: 602  SVYTRTGGDD-EIGVVQITPVDWQYR-RSVKAIIEELEQVTDTFPGVEI-EYKFPDAGPP 658
            S +   G +  + G+       W  R R+   ++  ++   +   G++I  +  P   P 
Sbjct: 592  SSFQINGFNGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSL-PG 650

Query: 659  VEHDLEIEISARVADD---LDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDA 715
                L  +     A D   L   AQ+++  A+ +     L  + +    +  +DI R  A
Sbjct: 651  TGEGLPFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAKA 710

Query: 716  SRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRD-IGRFDQLRVKTA 774
            ++       +G T+  +    +I  +  +    +V   V  P  YRD  G  +   VK  
Sbjct: 711  AQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERP--YRDNPGWLNNYYVKND 768

Query: 775  QG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLP 833
            QG L+PL+    +    +   +++   +++ + +       +L   L  ++   RE   P
Sbjct: 769  QGQLLPLSTLITLTDRARPRQLNQF--QQLNAAIIQGVPMVSLGEALKTVQDIARE-EAP 825

Query: 834  SSVEFRIRGQNEE--QEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTV 891
                F   G   +  QE SA+++   F +ALA + ++L  QF SF    +IL  V  S  
Sbjct: 826  EGFAFDYAGAARQYVQEGSALWV--TFGLALAIIFLVLAAQFESFRDPLVILVTVPLSIC 883

Query: 892  GVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLL-KRGLSREEAILRTGV 950
            G    L +       I + +G++ L G++  + I++++  NQL  +RGLS  EAI     
Sbjct: 884  GALLPLFLGVSSMN-IYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAA 942

Query: 951  QRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVL 1010
             RLRPVL+TT   + G++P++L      +++              +   +A G++  T+ 
Sbjct: 943  IRLRPVLMTTAAMVFGMVPLILASGAGAVSR------------FDIGMVIATGMSIGTLF 990

Query: 1011 TLVLTPCLLML 1021
            TL + PC+  L
Sbjct: 991  TLFVLPCIYTL 1001



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 62/306 (20%), Positives = 131/306 (42%), Gaps = 27/306 (8%)

Query: 732  VTNGLKIGDYLPDDSD---EEVDILVRYPSEYRDIGRFDQLRVKTA-QGLVPLTNFAQI- 786
            VTN ++  ++L    +   E V   V   +E +    F  L +KT+    V L + A++ 
Sbjct: 203  VTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAFAALPLKTSGDSRVLLGDVARVE 262

Query: 787  IPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELN--LPSSVEFRIRGQN 844
            +  +  DT+   DG   + +        N    +  + + + EL   LPS++   I    
Sbjct: 263  MGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIMPELESQLPSALNVSIA--Y 320

Query: 845  EEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPF 904
            +        +++       A+ I+++  F        +L  V+   + +  G+L F +  
Sbjct: 321  DATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMI-GVLFFMQMM 379

Query: 905  GIIMSGIGVIALA---GIVVNNNIVLIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTV 961
            G  ++ + ++A+    G+VV++ IV+++  ++ ++ G S  +A L    +   PV+  T+
Sbjct: 380  GYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTI 439

Query: 962  TTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTP--CLL 1019
            T      P+     +         GA     + + A  +AG +  + ++ L L+P  C L
Sbjct: 440  TLAAVYAPIGFLTGLT--------GA----LFKEFALTLAGAVIISGIVALTLSPMMCAL 487

Query: 1020 MLGRRR 1025
            +L R +
Sbjct: 488  LLRREQ 493