Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., aminoglycoside/multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score =  269 bits (687), Expect = 9e-76
 Identities = 246/1044 (23%), Positives = 455/1044 (43%), Gaps = 65/1044 (6%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L + + + G     ++P E  PD+  P + V+ ++ G S    E  + + +EQ M  ++ 
Sbjct: 15   LAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENTVTQVIEQNMTGLDN 74

Query: 78   VKEMTATAS-EGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAA 136
            +  M++ +S  G ASV L F  G D  +A+  V++ +  A  KLP       V  V    
Sbjct: 75   LMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVT-VRKTG 133

Query: 137  EQPVLSVVLYGTV----PERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLL 192
            +  +L++    T      +     +A  ++D L     +  +D  G +  +  I +DP  
Sbjct: 134  DTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSM-RIWLDPAK 192

Query: 193  MESYGLDQSDIYNLIALNNRVVAAG------FVDTGYGRFSVKVPSVFESLKDVLELPIK 246
            + S+ +   D+ + I   N  +A G       VD      ++   S+ ++ +   ++ ++
Sbjct: 193  LNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLLQTPEQFRDITLR 252

Query: 247  V--EGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLG 304
            V  +G +V   GDVATV       +  +R +GKPA  L +K  SG N + T ELV   L 
Sbjct: 253  VNQDGSEV-RLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLD 311

Query: 305  EAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVG 363
            E      +P+ L  K  ++ +  VK  + D+   +L AI LV +V+   L   R +L+  
Sbjct: 312  ELAQY--FPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPT 369

Query: 364  VSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRM-QEGMHRSE 422
            +++P   +    VL  FG +VN + +FA+++A+G+LVD AIVV E  +R M +EG+   E
Sbjct: 370  IAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPRE 429

Query: 423  AYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFV 482
            A R +  ++   +        A F P+ F+   TG   +   +T++A +  S+++A++  
Sbjct: 430  ATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILT 489

Query: 483  PVLGSLFGRP-QKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALL 541
            P L +   +P +K     Q    A  N  F++     + Y   +A  +   ++ +   +L
Sbjct: 490  PALCATLLKPLKKGEHHGQKGFFAWFNQMFNRN---AERYEKGVAKILHRSLRWIVIYVL 546

Query: 542  MSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDE-- 599
            +   + F + +  L   F P  D   F+  V+     +  +  +++  IE+    H++  
Sbjct: 547  LLGGMVFLFLR--LPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKDN 604

Query: 600  ----FESVYTRTGGDDE-IGVVQITPVDWQYRRSVK----AIIEELEQVTDTFPGVEIEY 650
                F +V +  GG+ + +  + I   DW  R S      AIIE   +  +      +  
Sbjct: 605  IMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEARVIA 664

Query: 651  KFPDA----GPPVEHDLEIEISARVADD-LDKAAQQVRLWAEANPALTNLSDNGSKPGID 705
              P A    G     D+E++  A    D L  A  Q+   A  NP LT +  NG      
Sbjct: 665  SSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLDDSPQ 724

Query: 706  WKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYR---- 761
             +IDI +  A         + +T+Q       + D++  D      + V+  + YR    
Sbjct: 725  LQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFM--DRGRVKKVYVQAAAPYRMLPD 782

Query: 762  DIGRFDQLRVKTAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELP 821
            DI  +  +R K   G+VP + FA    E     + R +G   + ++ +   G +    + 
Sbjct: 783  DINLW-YVRNKDG-GMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMD 840

Query: 822  AIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFL 881
             +E  +++  LP+         + ++  S       + ++L  + + L   + S+   F 
Sbjct: 841  IMESLVKQ--LPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFS 898

Query: 882  ILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSR 941
            ++  V    +G      +      +    +G++ + G+   N I++++  N++ ++G   
Sbjct: 899  VMLVVPLGVIGALLATWMRGLENDVYFQ-VGLLTVIGLSAKNAILIVEFANEMNQKGHDL 957

Query: 942  EEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVA 1001
             EA L    QRLRP+L+T++  I G+LPM          Q              + T V 
Sbjct: 958  FEATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQ------------HAVGTGVM 1005

Query: 1002 GGLAFATVLTLVLTPCLLMLGRRR 1025
            GG+  AT+L +   P   +L RRR
Sbjct: 1006 GGMISATILAIYFVPLFFVLVRRR 1029