Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1025 a.a., multidrug efflux system, subunit C (NCBI) from Escherichia coli BW25113

 Score =  272 bits (695), Expect = 1e-76
 Identities = 235/1027 (22%), Positives = 456/1027 (44%), Gaps = 57/1027 (5%)

Query: 16   LTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSI 75
            + L V I + G+  +  +P    P V  P+I VS S  G SP      +  PLE+ +  I
Sbjct: 15   ILLSVAITLCGILGFRMLPVAPLPQVDFPVIIVSASLPGASPETMASSVATPLERSLGRI 74

Query: 76   EGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLA 135
             GV EMT+++S G   ++L+F+   D+  A  DV+ A++ A+  LP+             
Sbjct: 75   AGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMPSRPTYRKANP 134

Query: 136  AEQPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLM 193
            ++ P++ + L      +  +    + QL   +     +  VD+ G     V + ++P  +
Sbjct: 135  SDAPIMILTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQAL 194

Query: 194  ESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVI 253
             + G+   D+   ++  N     G ++ G  R+ ++     ++  +   L I       +
Sbjct: 195  FNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAV 254

Query: 254  TFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWP 313
              GDVATV  S +D  +    + KPAI+L I+K    NII+TV+ ++A L E Q  +  P
Sbjct: 255  RLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQ--ETIP 312

Query: 314  NNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVGVSIPGSFLT 372
              + ++   D S  ++  L +++  ++ ++ LV++V+   L   R +++  VS+P S + 
Sbjct: 313  AAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIG 372

Query: 373  GLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMA 432
                + + G ++N + L AL +A G +VD AIVV E   R ++ GM   +A     + + 
Sbjct: 373  TFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVG 432

Query: 433  WPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRP 492
            + + + + + +A F PLL    + G  ++   +TL   +  SL+++L   P++     + 
Sbjct: 433  FTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKA 492

Query: 493  QKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLMSAAIAFAYGK 552
             K  +  + R      G       + + Y  +L   + H    L G +L+       +  
Sbjct: 493  SKPREQKRLR------GFGRMLVALQQGYGKSLKWVLNH--TRLVGVVLLGTIALNIWLY 544

Query: 553  AGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGG--- 609
              +   FFPE D       +++   +S       + D  +++      ++V   TGG   
Sbjct: 545  ISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRV 604

Query: 610  DDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGV--------EIEYKFPDAGPPVEH 661
            +  +  + + P D +   + + II+ L       PG         +I      +    ++
Sbjct: 605  NSGMMFITLKPRD-ERSETAQQIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQY 663

Query: 662  DLEIEISARVADDLDKAAQ---QVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRF 718
             L       ++DDL    +   ++R      P L +++ +    G +  +   RD  +R 
Sbjct: 664  TL-------LSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARL 716

Query: 719  AADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTAQG-L 777
              D     + +       +I       +  +V ++   P   +DI   +++ V   +G  
Sbjct: 717  GIDVQAANSLLNNAFGQRQISTIYQPMNQYKV-VMEVDPRYTQDISALEKMFVINNEGKA 775

Query: 778  VPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLPSSVE 837
            +PL+ FA+  P     +++        ++  +L  G +L+    AI++A+ +L +PS+V 
Sbjct: 776  IPLSYFAKWQPANAPLSVNHQGLSAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVR 835

Query: 838  FRIRGQN---EEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVF 894
                G     +E  +S V L    + A+A + I+L   + S+     IL+ +  + VG  
Sbjct: 836  GSFAGTAQVFQETMNSQVIL---IIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGAL 892

Query: 895  AGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRG-LSREEAILRTGVQRL 953
              L +F  PF +I + IG++ L GIV  N I+++D   +  + G L+ +EAI +  + R 
Sbjct: 893  LALELFNAPFSLI-ALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRF 951

Query: 954  RPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLV 1013
            RP+++TT+  + G LP+VL             G   ++    L   + GGL  + +LTL 
Sbjct: 952  RPIMMTTLAALFGALPLVLS------------GGDGSELRQPLGITIVGGLVMSQLLTLY 999

Query: 1014 LTPCLLM 1020
             TP + +
Sbjct: 1000 TTPVVYL 1006