Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1040 a.a., multidrug efflux system, subunit B (NCBI) from Escherichia coli BW25113

 Score =  291 bits (744), Expect = 2e-82
 Identities = 250/1029 (24%), Positives = 470/1029 (45%), Gaps = 58/1029 (5%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L+V IL+AG+  Y  +P  + P+V  P I V   + G SP      +  PLE++   + G
Sbjct: 26   LMVAILLAGIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSG 85

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            +K+M++ +S G + + L+F + + L  A  +V+ A++ A   LP+D   P V      A+
Sbjct: 86   LKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPAD 145

Query: 138  QPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMES 195
             P++++ +  T    T V  ++  ++  K+     +  V ++G +   V + ++   + +
Sbjct: 146  PPIMTLAVTSTAMPMTQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAA 205

Query: 196  YGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVITF 255
             GL    +   I   N   A G +D      ++      +S ++  +L I  +    I  
Sbjct: 206  LGLTSETVRTAITGANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRL 265

Query: 256  GDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNN 315
            GDVATV +   +    A  + + AIV++++++ G NII T + ++ +L   Q  +  P +
Sbjct: 266  GDVATVEQGAENSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQML--PQLTESLPKS 323

Query: 316  LLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVGVSIPGSFLTGL 374
            + V  + D + +++  ++D Q  ++ AI LVV++I   L  +  +++ GV++P S +   
Sbjct: 324  VKVTVLSDRTTNIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTF 383

Query: 375  LVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWP 434
             V+     ++N + L AL +A G +VD AIVV E   R +++G     A    A  + + 
Sbjct: 384  AVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFT 443

Query: 435  ITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQK 494
            I + T + +A   PLLF  D+ G   +   +TL   +  S V++L   P++ +     + 
Sbjct: 444  IISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQES 503

Query: 495  VTQANQARMVALHNGDFSQAT-----GITKAYYSTLAIAIRHP---IKILCGALLMSAAI 546
            + + N+          FS+A+      I  AY   LA  + HP   + +    LL+S  +
Sbjct: 504  LRKQNR----------FSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLL 553

Query: 547  AFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTR 606
                 K      FFP  D       +++    S     +    +  V+L     +S+ + 
Sbjct: 554  WVFIPKG-----FFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSF 608

Query: 607  TGGDDEIG-------VVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPV 659
             G D            + + P+D +  R V+ +I  L+   D  PGV++ +  P     +
Sbjct: 609  VGVDGTNPSLNSARLQINLKPLDERDDR-VQKVIARLQTAVDKVPGVDL-FLQPTQDLTI 666

Query: 660  EHDL-----EIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDD 714
            +  +     +  + A   D L     Q+    +  P L+++S +    G+   +++ RD 
Sbjct: 667  DTQVSRTQYQFTLQATSLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDS 726

Query: 715  ASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTA 774
            ASR       V N + +   G ++   +   +++   +L         +   D +R+ ++
Sbjct: 727  ASRLGISMADVDNAL-YNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSS 785

Query: 775  Q-GLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLP 833
              G+VPL++ A+I       +I+ +D   V ++  ++ + Y+L   + AI    + LNLP
Sbjct: 786  DGGVVPLSSIAKIEQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLP 845

Query: 834  SSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGV 893
              +  + +G     + +        + A+ AM I+L   + SF     IL+ +  + VG 
Sbjct: 846  VDITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGA 905

Query: 894  FAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLID-TYNQLLKRGLSREEAILRTGVQR 952
               LLI      +I + IG+I L GIV  N I++ID       ++G+S  EAI +  + R
Sbjct: 906  LLALLIAGSELDVI-AIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPREAIYQACLLR 964

Query: 953  LRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTL 1012
             RP+L+TT+  +LG LP++L   +       E   P       L   + GGL  + VLTL
Sbjct: 965  FRPILMTTLAALLGALPLMLSTGVG-----AELRRP-------LGIGMVGGLIVSQVLTL 1012

Query: 1013 VLTPCLLML 1021
              TP + +L
Sbjct: 1013 FTTPVIYLL 1021