Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Erwinia tracheiphila SCR3

 Score =  284 bits (727), Expect = 2e-80
 Identities = 251/1044 (24%), Positives = 476/1044 (45%), Gaps = 62/1044 (5%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L+V IL+AG+  +  +P  + P+V  P I V   + G SP      +  PLE++   + G
Sbjct: 28   LMVAILLAGILAWRVLPVSALPEVDYPTIQVVTLYPGASPDVVTSSVTAPLERQFGQMSG 87

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEPTVNEVTLAAE 137
            +K+M++ ++ G + + L+F + + L  A  +V+ A++ A   LPAD   P V      A+
Sbjct: 88   LKQMSSQSTGGASVITLQFQLSLKLDVAGQEVQAAINAATNLLPADLPNPPVYSKVNPAD 147

Query: 138  QPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLMES 195
             P++++ +  T    T V  ++  ++  K+     +  V ++G +   V + ++   + +
Sbjct: 148  PPIMTLAVTTTSMPLTQVQDMVETRIAQKISQVPGVGLVTLSGGQRPAVRVKLNAQALAA 207

Query: 196  YGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVITF 255
             GLD   + ++I   N   A G +D      ++      +S +D   L +  +    +  
Sbjct: 208  RGLDSETVRSVIGSANVNSAKGSLDGPERSVTLSANDQMKSAEDYRLLIVSYQNGSPVRL 267

Query: 256  GDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNN 315
             D+AT+ +   +    A  + +PAIVL+++++ G NII T + ++A+L    A    P +
Sbjct: 268  RDIATIEQGAENRWLGAWANQRPAIVLNVQRQPGANIITTADSIRAMLPGLVAT--LPAS 325

Query: 316  LLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVGVSIPGSFLTGL 374
            + ++ + D + +++  + D+Q  ++ AI LVV++I   L  +  +L+  +++P S +   
Sbjct: 326  VDMQVLTDRTTNIRASVKDVQIELVLAIALVVMIIYLFLRNIAATLIPAIAVPLSLIGTF 385

Query: 375  LVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWP 434
             V+   G ++N + L ALI+A G +VD AIVV E   R +++G    +A    +  + + 
Sbjct: 386  AVIYFLGYSINNLTLMALIVATGFVVDDAIVVIENISRYIEKGDKPLDAALKGSGEIGFT 445

Query: 435  ITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQK 494
            I + T + +A   PLLF  D+ G   +   +TL  ++  S V++L   P++ +       
Sbjct: 446  IISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVSILISAVVSLTLTPMMCARMLNADS 505

Query: 495  VTQANQARMVALHNGDFSQAT-----GITKAYYSTLAIAIRHPIKILCGALLMSAAIAFA 549
            + + N+          FS+A+      +  AY   L   + HP   L  AL   A     
Sbjct: 506  LRKQNR----------FSRASEALFDRVIAAYGRILTKVLNHPWLTLSVALATLALTVLL 555

Query: 550  YGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGG 609
            +     G  FFP  D       +++   +S     +    +   ++     ES+    G 
Sbjct: 556  WVIIPKG--FFPVQDNGIIQGTLQAPQSVSYENMAQRQQQVAARIIKDPAVESLTAFIGV 613

Query: 610  DDEIGV-------VQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPVEHD 662
            D            + + P+  +  R ++ +I+ L+      PGV++ Y  P     ++  
Sbjct: 614  DGTNSALNSGRLQINLKPLSERDDR-IQQVIKRLQHEVAQLPGVDL-YLQPIQDLTIDTT 671

Query: 663  L-----EIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASR 717
            +     +  + A   D L     Q+     A P L ++S +    G++  I + RD ASR
Sbjct: 672  VSRTQYQFTLQANTLDALSLWVPQLMAKLSALPQLQDISSDWQNRGLEAFIRVDRDSASR 731

Query: 718  FAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTAQG- 776
                   V N + +   G ++   +   S +   +L         +   D + +K++ G 
Sbjct: 732  LGIGMADVDNAL-YNAFGQRLISTIYTQSSQYRVVLEHDTRSTPGLAALDAIHLKSSNGT 790

Query: 777  LVPLTNFAQIIPEQKQDT--IHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLPS 834
            +VPL+  A+  PEQ+     I+ +D     +   ++  GY+L   + AI +A +EL +P+
Sbjct: 791  VVPLSALAR--PEQRYGPLGINHLDQFPSTTFSFNVSNGYSLEQAVNAISKARQELAMPA 848

Query: 835  SVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVF 894
             +  + +G     + +        + A+  M I+L   + SF     IL+ +  + VG  
Sbjct: 849  EIMTQFQGSTLAFQAALSSTVWLIIAAIVVMYIVLGVLYESFIHPITILSTLPTAGVGAL 908

Query: 895  AGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLID-TYNQLLKRGLSREEAILRTGVQRL 953
              L++      +I + IG+I L GIV  N I++ID       +RG++  EAI +  + R 
Sbjct: 909  LALMLCGNELDVI-AIIGIILLIGIVKKNAIMMIDFALAAERERGMAPYEAIYQACLLRF 967

Query: 954  RPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLV 1013
            RP+L+TT+  + G LP++L        Q  E   P       L  A+ GGL  + VLTL 
Sbjct: 968  RPILMTTLAALFGALPLMLSS-----GQGAELRQP-------LGIAMVGGLIASQVLTLF 1015

Query: 1014 LTPCLLML------GRRRKGVSED 1031
             TP + +L        RR+G+ E+
Sbjct: 1016 TTPVIYLLFDQLARASRRRGMREE 1039