Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., Cation/multidrug efflux pump from Enterobacter asburiae PDN3

 Score =  251 bits (640), Expect = 2e-70
 Identities = 259/1057 (24%), Positives = 447/1057 (42%), Gaps = 84/1057 (7%)

Query: 13   RTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEM 72
            R  LT+L+ + + G+   L I +   P  TI    V   + G S    E  +  PLE  +
Sbjct: 13   RVWLTILL-LGIGGIFALLNIGRLEDPAFTIKTAVVVTHYPGASAQQVEEEVTLPLENAL 71

Query: 73   RSIEGVKEMTATASEGHASVVLEFNVGV---DLAKAMADVRDAVDLAKPKLPADSDEPTV 129
            + +  +  +++ +S G + + +         +L +   ++R  V  A    P     P V
Sbjct: 72   QQLPYLDNVSSISSNGLSQITVNIASRYHSNELPQIWDELRRRVGDASRLFPPGVVTPFV 131

Query: 130  NEVTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDREEIVEIIVD 189
            N+            +          V  A QLR +L     +  V I G   + V I + 
Sbjct: 132  ND-DFGDVFGFFFAISGDEFSNPELVRYAEQLRRELILIPGVAKVAIGGAISQQVNIDIS 190

Query: 190  PLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEG 249
               M + G+  + +  L++  N V +AG + +G     +     FE+L ++ ++ I   G
Sbjct: 191  LTKMAARGITLNQLSALLSRLNVVSSAGEITSGTESIRLHPTGEFENLDELADIIITPSG 250

Query: 250  KQVIT-FGDVATVRKSFRD-PESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQ 307
                T   D+AT+ +   + P S    +GK A+ + +    G N+I+    ++A L +  
Sbjct: 251  TGAATRLRDIATLSRGLNESPASIYHANGKKAVTMGVSFIPGVNVIDVGHALEAKLNQMS 310

Query: 308  ARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLLVGVSIP 367
            A    P  + +   +D++ +V   +N    N L A+ +V+ V++  +GVR+ +++  S+ 
Sbjct: 311  AEK--PAGIQIDLFYDQAAEVGHSVNGFIINFLMALAIVIGVLLVFMGVRSGIIIAFSLA 368

Query: 368  GSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDA 427
             + L  LL++ ++G+ +  + L ALI+A+ MLVD AIV+ E      Q+G     A    
Sbjct: 369  LNVLGTLLIMYLWGIELQRISLGALIIALSMLVDNAIVIVEGVLIARQQGSPLLTAVNYI 428

Query: 428  AKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGS 487
             +R A P+  +T   + AFAP+    D TGE+ K L   L+ +L  S   AL   PVL  
Sbjct: 429  IRRSALPLLGATVIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSWFSALTLTPVLIK 488

Query: 488  LF-----GRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRH--PIKILCGAL 540
             +       P K  +++                 + +AY   L   + H  P  I+  AL
Sbjct: 489  WWLFKNDSAPDKTDESD------------PYDKRLYRAYQRLLNTLLHHKAPALIVMAAL 536

Query: 541  LMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEF 600
            L     A  +G   +   FFP  + P F V +       +   +++  DIE+ + G    
Sbjct: 537  L----AASVWGFGAVRQNFFPSSNTPIFFVDLWLPYGTDIKWTEKMTGDIEKTINGQPGV 592

Query: 601  ESVYTRTG-----------GDDEIGVVQITPVDWQYRRSVKAIIEEL-EQVTDTFPGVEI 648
            E+  +  G           G  +        V    +R++ A+   + E +   +P V  
Sbjct: 593  ETTVSTIGQGSMRFILTYSGQRQYSNYAQIMVRMDDQRNISALTRHVDEYIARNYPQVNA 652

Query: 649  EYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKI 708
              K    GP  +  +E+ I     D L   A QV      +PA  ++ ++        + 
Sbjct: 653  STKRVMFGPSGDSAIEVRIKGPDPDRLRLIASQVDDILTRDPATGSVRNDWQNRSKVIRP 712

Query: 709  DIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYP-SEYRDIGRFD 767
                        D   V N ++   +G + G Y   +  + + ++VR P SE  D    +
Sbjct: 713  QYVAALGRELGVDKQDVDNALEMNFSGSRAGLY--REGSDLLPVVVRPPESERLDANHLN 770

Query: 768  QLRV--KTAQGLVPLTN-FAQIIPEQKQDTIHRVDGRRVISVMAD------LKEGYNLAL 818
             + V  +T Q  +PL+N  ++   E +   I R D  RV++V  D         G  LA 
Sbjct: 771  NVLVWSQTRQQYIPLSNVVSRFSLEWEDPLILRRDRSRVLTVQTDPDPLSQQTSGDILAR 830

Query: 819  ELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQ 878
              P I+     L+LP        G  E    +   L     +    M +I +  F+S   
Sbjct: 831  VKPQID----ALSLPHGYSIEWGGDAENSSEAQQGLFTTLPLGYLVMFVITVLMFSSVKN 886

Query: 879  AFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRG 938
            A  I   V  + +GV  G L+   PFG  M+ IG+++L+G+++ N IVL++   Q  K  
Sbjct: 887  AVAIWLTVPLALIGVTPGFLLTGIPFG-FMALIGLLSLSGMLIRNGIVLVEEIEQ-QKTQ 944

Query: 939  LSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLAT 998
              + EAI+     RLRP+LLT  TT+LGL P++L++                 ++  +A 
Sbjct: 945  KDQHEAIVYAATSRLRPILLTAFTTVLGLAPLLLDV-----------------FFQSMAV 987

Query: 999  AVAGGLAFATVLTLVLTPCLLMLGRRRKGVSEDEAPQ 1035
             +  GL FAT+LTL++ P +     R+     DEA Q
Sbjct: 988  VIMFGLGFATILTLLVLPVIYACFHRK-----DEAKQ 1019