Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1025 a.a., Cation/multidrug efflux pump from Enterobacter asburiae PDN3

 Score =  266 bits (681), Expect = 4e-75
 Identities = 241/1037 (23%), Positives = 457/1037 (44%), Gaps = 59/1037 (5%)

Query: 8    ALSRTRTMLTLLVFILVA--GVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIV 65
            AL   R + T+L+ + +   GV  +  +P    P V  P+I VS S  G SP      + 
Sbjct: 5    ALFIYRPVATILISLAITLCGVLGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVA 64

Query: 66   RPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSD 125
             PLE+ +  I GV EMT+++S G   ++LEF+   D+  A  DV+ A++ A+  LP+   
Sbjct: 65   TPLERSLGRIAGVNEMTSSSSLGSTRIILEFSFDRDINGAARDVQAAINAAQSLLPSGMP 124

Query: 126  EPTVNEVTLAAEQPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEI 183
                      ++ P++ + L      +  +    + QL   +     +  V + G     
Sbjct: 125  SRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQINGVGDVSVGGSSLPA 184

Query: 184  VEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLEL 243
            V + ++P  + + G+   D+ + I+  N     G ++ G  R+ +      ++  +   L
Sbjct: 185  VRVGLNPQALFNQGVSLDDVRSAISTANVRKPQGAIEDGSHRWQIHTNDELKTAAEYQPL 244

Query: 244  PIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVL 303
             I       +   DVA+V  S +D  +    + KPAI+L I+K    NIIETV  ++A L
Sbjct: 245  IIHYNNGAAVRLSDVASVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIETVNSIRARL 304

Query: 304  GEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLV 362
             + Q  +  P  + ++   D S  ++  L +++  ++ ++ LV++V+   L   R +L+ 
Sbjct: 305  PDLQ--ETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVALVILVVFLFLRSGRATLIP 362

Query: 363  GVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSE 422
             V++P S +     + + G ++N + L AL +A G +VD AIVV E   R ++ G+   +
Sbjct: 363  AVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPLQ 422

Query: 423  AYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFV 482
            A     + + + + + + + +A F PLL    + G  ++   +TL   +  SLV++L   
Sbjct: 423  AALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLVISLTLT 482

Query: 483  PVL-GSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALL 541
            P++ G +  R +  +Q  +        G       + + Y  +L   + H    L G +L
Sbjct: 483  PMMCGWMLKRSKPHSQPRR-------KGFGRLLMAMQEGYGKSLKWVLNH--TRLVGLVL 533

Query: 542  MSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFE 601
            +   +   +    +   FFPE D       +++   +S       + D  +++      +
Sbjct: 534  IGTIVLNVWMYITIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQDFMKIIREDKAVD 593

Query: 602  SVYTRTGGDD-EIGVVQIT-PVDWQYRRSVKAIIEELEQVTDTFPGV--------EIEYK 651
            +V   TGG     G++ IT     +   + + +I+ L       PG         +I   
Sbjct: 594  NVTGFTGGSRVNSGMMFITLKPRGERNETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVG 653

Query: 652  FPDAGPPVEHDLEIEISARVADDLDKAAQ---QVRLWAEANPALTNLSDNGSKPGIDWKI 708
               A    ++ L       ++DDL    +   ++R    A P L +++ +    G +  +
Sbjct: 654  GRQANASYQYTL-------LSDDLAALREWEPKIRKALAALPELADVNSDQQDNGAEMAL 706

Query: 709  DIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQ 768
               R+  SR   +     + +       +I       +  +V ++   P   +DI   D+
Sbjct: 707  TYDRETMSRLGINVEAANSLLNNAFGQREISTIYQPMNQYKV-VMEVDPRYTQDISALDK 765

Query: 769  LRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQAL 827
            + V    G  +PL+ FA   P     +++        ++  +L  G +L+    AI +A+
Sbjct: 766  MFVINNDGKAIPLSYFASWQPANAPLSVNHQGLSAASTISFNLPAGSSLSEASDAINRAM 825

Query: 828  RELNLPSSVEFRIRGQN---EEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILT 884
             +L +PS+V     G     +E  +S V L    + A+A + I+L   + S+     IL+
Sbjct: 826  TQLGVPSTVRGSFAGTAQVFQETMNSQVIL---ILAAIATVYIVLGVLYESYVHPLTILS 882

Query: 885  AVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRG-LSREE 943
             +  + VG    L +F  PF +I + IG++ L GIV  N I+++D      + G LS EE
Sbjct: 883  TLPSAGVGALLALELFGAPFSLI-ALIGIMLLIGIVKKNAIMMVDFALDAQRNGNLSPEE 941

Query: 944  AILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGG 1003
            AI +  + R RP+++TT+  + G LP+V+             G   ++    L   + GG
Sbjct: 942  AIFQACLLRFRPIMMTTLAALFGALPLVIS------------GGDGSELRQPLGITIVGG 989

Query: 1004 LAFATVLTLVLTPCLLM 1020
            L  + +LTL  TP + +
Sbjct: 990  LVMSQLLTLYTTPVVYL 1006