Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  291 bits (744), Expect = 2e-82
 Identities = 249/1042 (23%), Positives = 467/1042 (44%), Gaps = 48/1042 (4%)

Query: 18   LLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPLEQEMRSIEG 77
            L++ IL+AG+  Y  +P  + P+V  P I V   + G SP      +  PLE +  S+ G
Sbjct: 31   LMIAILLAGIVGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLEHQFGSMSG 90

Query: 78   VKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSD-EPTVNEVTLAA 136
            +K+M++ +S G + + L+F + + L  A  DV+ A++ A   LP+D    PT N+V   A
Sbjct: 91   LKQMSSQSSGGSSVITLQFQLSLSLDVAEQDVQAAINAATNLLPSDLPFPPTYNKVN-PA 149

Query: 137  EQPVLSVVLYGTVPERTTV--LIARQLRDKLESFRQILSVDIAGDREEIVEIIVDPLLME 194
            + P++++ +  T    T V  +I  ++  K+     +  V +AG +   V + ++P  + 
Sbjct: 150  DPPIMTLAVTSTALPLTQVQDMIETRIAQKIAQVEGVGLVTLAGGQRPSVRVKLNPGALA 209

Query: 195  SYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIKVEGKQVIT 254
            +YGL    +   I   N     G  D      ++       SL D  +L I  +    + 
Sbjct: 210  AYGLSSETVRTAITAANVNTPKGSFDGPARAVTLSANDQMRSLDDYRQLIIAWKNNAPVR 269

Query: 255  FGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPN 314
              DVATV ++  +    A  +   AIVL+I+++ G N+I T + ++++L   +A    P 
Sbjct: 270  LQDVATVEQAAENTHLAAWANQNQAIVLNIQRQPGANVIATADHIRSLLPTLKA--SLPK 327

Query: 315  NLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLVGVSIPGSFLTG 373
            ++ V  + D +  ++  + D+Q  ++ AI LVV+VI   L     +L+  +++P S +  
Sbjct: 328  SVDVALLTDRTTTIRASVGDVQFELILAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGT 387

Query: 374  LLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAW 433
               +   G ++N + L AL +A G +VD AIVV E   R +++G    +A    A  + +
Sbjct: 388  FAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENIARYIEKGEKPLQAALKGAGEIGF 447

Query: 434  PITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQ 493
             I + T + +A   PLLF  D+ G   +   +TL  ++  S V++L   P++ +      
Sbjct: 448  TIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVSILISAVVSLTLTPMMCARLLSHH 507

Query: 494  KVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHP---IKILCGALLMSAAIAFAY 550
             ++Q N+    +    D+     +   Y   L   + HP   + +    L+++  +    
Sbjct: 508  SLSQQNRFTRASERFFDW-----VIALYGRGLTRVLSHPWITLSVALSTLVLTILLYIVI 562

Query: 551  GKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFESVYTRTGGD 610
             K      FFP  D       V++   +S  +       +  +++     ESV +  G D
Sbjct: 563  PKG-----FFPIQDNGIIQGTVQASQTISFTDMVDKQQQVTTLIMQDPAVESVSSFIGVD 617

Query: 611  D-----EIGVVQIT--PVDWQYRRSVKAIIEELEQVTDTFPGVEIEYKFPDAGPPVEHDL 663
                    G +QI   P+D +  R ++ +I+ L+Q T   PGV++ Y  P     ++  +
Sbjct: 618  GTNPSLNSGRLQINLKPLDERSDR-IQGVIDRLQQRTSALPGVQL-YLQPVQDLTIDTQV 675

Query: 664  -----EIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKIDIRRDDASRF 718
                 +  +     D+L     ++    +  P L ++S +    G    + + RD ASR 
Sbjct: 676  SRTQYQFTLQTMSLDELSTWVPKLTAELQKLPQLQDVSSDWQDGGAVAYLKVNRDSASRL 735

Query: 719  AADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRFDQLRVKTAQGLV 778
                + + + +        I       +   V +  R+ S        D   + ++ G+V
Sbjct: 736  GITMSQIDSALYNAFGQRLISTIYTQSNQYRVVLEQRHDSSNGLAALSDIRLINSSGGVV 795

Query: 779  PLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQALRELNLPSSVEF 838
            PL++ A +   Q   +++ +D     ++  ++  GY L   L AI+Q  +++ LP  +  
Sbjct: 796  PLSSIATVEERQGPLSVNHIDQFPSTTMSFNVAPGYALGDALKAIQQTQQQMQLPGDIIT 855

Query: 839  RIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVIFSTVGVFAGLL 898
            R +G     + +        + A+ AM I+L   + SF     IL+ +  + VG    L+
Sbjct: 856  RFQGSTLAFQSALTSTIWLVVAAVVAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALI 915

Query: 899  IFQKPFGIIMSGIGVIALAGIVVNNNIVLID-TYNQLLKRGLSREEAILRTGVQRLRPVL 957
            I      II + IG+I L GIV  N I++ID       ++G++  +AI +  + R RP+L
Sbjct: 916  IAGSDLNII-AIIGIILLIGIVKKNAIMMIDFALAAEREQGMTPYQAIYQACLLRFRPIL 974

Query: 958  LTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPC 1017
            +TT+  +L  +P++    +              +    L   + GGL  + VLTL  TP 
Sbjct: 975  MTTMAALLSAVPLMFSTGV------------GAELRHPLGICMVGGLVMSQVLTLFTTPV 1022

Query: 1018 LLMLGRRRKGVSEDEAPQDAQS 1039
            + +L  R         PQ+ ++
Sbjct: 1023 IYLLFDRLAHRLRRRQPQEGEA 1044