Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1016 a.a., efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score =  292 bits (748), Expect = 7e-83
 Identities = 253/1050 (24%), Positives = 461/1050 (43%), Gaps = 84/1050 (8%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L D AL     +   ++   V G  +Y  + +E  P  TI  + +     G +  +  
Sbjct: 4    FNLSDWALEHRSLVWYFIIISAVIGFFSYQELGREEDPAFTIKTMVIQAQWPGATAEEMT 63

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMA---DVRDAVDLAKP 118
              +   +E++++ I+ +    +  + G   + ++        +  A    VR+ +   + 
Sbjct: 64   NQVTDRIEKKLQEIDTLDHTRSQTTAGQTIIFVDLKEDTPSKEVRAVWQRVRNMMADIQG 123

Query: 119  KLPADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAG 178
              P     P +N+        + +    G + +R        ++ K+ +   +  V+I G
Sbjct: 124  NFPVGIQGPFLNDRFDDVFGNIYAFTRDG-ISQRQLRDYVNDVQKKVLTIPNVGRVEILG 182

Query: 179  DREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLK 238
             ++E++ +  +P      G+ +SD+   +   N V A+GF++ G  R +++V   F S +
Sbjct: 183  AQDEVIYLEFNPRKSAELGVSRSDVIAALQAQNAVTASGFMEAGSDRIALRVDGGFASEQ 242

Query: 239  DVLELPIKVEGKQVITFGDVATVRKSFRDPE-SFARLDGKPAIVLDIKKRSGENIIETVE 297
             +  + +++  +      DV  + + + DP  S  R DGKPAI L +  +SG N++    
Sbjct: 243  SLRHINLRINNR-FFPLTDVVNITRGYVDPPTSLFRYDGKPAIALAVGIKSGSNLL---- 297

Query: 298  LVKAVLGEAQARD------DWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVII 351
                V G A  R       D P  + V  + D+   V   ++     +  A+++V+ +  
Sbjct: 298  ----VFGHALDRTIDHIMHDLPAGVSVSKVSDQPAIVDEAVSGFTRALFEAVVIVLAISF 353

Query: 352  AILGVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFAD 411
              LGVR  L+V +SIP       LV+   G+++  + L ALI+A+G+LVD A++ TE   
Sbjct: 354  ISLGVRAGLVVAISIPLVLAITFLVMYYSGISLQRISLGALIIALGLLVDDAMIATEMMV 413

Query: 412  RRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATL 471
             R++ G    +A        A+P+   T  T+A+F P+ F     GEF+  L + +  +L
Sbjct: 414  ARLEMGDSLRKAATHVYTSTAFPMLTGTLVTVASFIPVGFNASNAGEFLFTLFVVIAVSL 473

Query: 472  TASLVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRH 531
              S V+A+L  P+LG     P+ +T+  + +    H            A+   L   +RH
Sbjct: 474  IVSWVVAVLIAPLLGVAL-LPKTITKQAEHQSRTDH------------AFSRMLQYCLRH 520

Query: 532  ---PIKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMS 588
                I   C A ++S         + +  +FFP  D P   V      + S+ E  R M+
Sbjct: 521  RWLTIGSACAAFIVSVLC-----MSLVQHQFFPSSDRPELIVDWNLPQNGSIEETSRQMA 575

Query: 589  DIEQVMLGHD---EFESVYTRTGG----------DDEIGVVQITPVDWQYRRSVKAIIEE 635
              EQ  L ++   +  S Y  TG              + + Q+  V    +   +   E 
Sbjct: 576  QFEQEKLQNNPDVDHWSSYIGTGAPRFILSFDVQPSSVSLGQMVIVAKDIKTRDRLQKEY 635

Query: 636  LEQVTDTFPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNL 695
               +  TFPG +   K  D GPPV   ++  ++      +   A ++      NP+LTNL
Sbjct: 636  RAYLAHTFPGTDAYVKLLDVGPPVGKPVQYRVAGPDIQTVRTEAHKLAAVIGQNPSLTNL 695

Query: 696  SDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVR 755
            + + ++P    K+++ +D A +    +  +   +    NGL  G+ +    D+   I V 
Sbjct: 696  AFDWNEPARVVKVNVLQDKARQMGVSSQAIAQAL----NGLTGGEVVTQVRDDIYLINVL 751

Query: 756  YPSEYRDIGRFDQLRVKTAQG----LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLK 811
            +  + +D G  D L      G     VPL++ A    + +Q TI R D    I++ A + 
Sbjct: 752  WRGQAKDRGSVDALLDLQLDGNNGRQVPLSSVATFSYQLEQPTIWRRDRAAAITLKAGVS 811

Query: 812  EGYNLALELPAIE---QALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAII 868
                 A  + A+E   + LR+ +LP        G  EE   +   + K   V L  +A I
Sbjct: 812  GDIQPATIVQALEPNVEVLRQ-SLPQGYTIETGGAVEESAKAQAPIVKVVPVMLFVIATI 870

Query: 869  LITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLI 928
            L+ Q  SF++ FL+ +    + +GV A LL+   P G + + +GV+AL GI++ N+++L+
Sbjct: 871  LMIQLQSFHRLFLVFSVAPLALIGVVAALLLSHAPLGFV-AILGVLALVGILIRNSVILV 929

Query: 929  DTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAP 988
               + L   G+S  +A+++    R+RP++LT     L L+P+  E+              
Sbjct: 930  VHIDTLRAEGISPWQAVVQATEHRMRPIMLTAAAATLALIPIAREI-------------- 975

Query: 989  STQWWSQLATAVAGGLAFATVLTLVLTPCL 1018
               +W  +A A+ GG+   TVLTL+  P L
Sbjct: 976  ---FWGPMAYAMMGGIIVGTVLTLLFLPAL 1002