Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  278 bits (711), Expect = 1e-78
 Identities = 249/1041 (23%), Positives = 464/1041 (44%), Gaps = 58/1041 (5%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L +  LSR   ++ L + ++V GV  +  +P  + P   +P I VS S  G SP      
Sbjct: 3    LAELCLSRPIAVMLLWLSVIVTGVICWTKLPVAALPSFDMPTIRVSASLSGASPETMASS 62

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            +  PLE+ + +I G+  +T+T+ +G  ++VLEF+  V++  A  DV+ A+     KLP+ 
Sbjct: 63   VATPLEKNLSTIPGLSMLTSTSLQGATTIVLEFDPSVNIDAAAVDVQSALYQTMKKLPSQ 122

Query: 124  SDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIAR----QLRDKLESFRQILSVDIAGD 179
               P        A+ P++++ +    P  T   + R     +   L + + +  V++ G 
Sbjct: 123  MTTPPSFRKVNPADAPIVAIGI--DSPSMTLSDLNRFTDNLISPALSTIKGVAEVNVIGQ 180

Query: 180  REEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKD 239
            +   V + +DP  + +  +  S++   +   N     G +D       ++         D
Sbjct: 181  KRYAVRVEIDPDRLAATDMTLSEVQTALKAANANSPIGELDGKRQMMMLQTSGDLMKAAD 240

Query: 240  VLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELV 299
               + I     Q +   DVA+V+ S  +  S++ ++G  AIVL I ++ G NI+ T++ +
Sbjct: 241  FANVIIATRNGQPVRLSDVASVQDSIENALSYSAVNGHTAIVLSINRQPGANIVATLDAI 300

Query: 300  KAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRT 358
              +L   QA+   P ++ VK + D S  ++  ++D+   ++  I LVV+VI+  L   R 
Sbjct: 301  NRLLPTLQAQ--MPPSVQVKLLNDRSLSIRQAIHDVNITLMLTIALVVLVILLFLRHFRA 358

Query: 359  SLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGM 418
            +L+  +S+P S L    ++ + G++++ + L  L +AVG++VD AIVV E   R M+EG 
Sbjct: 359  TLIPALSVPVSLLGAFALMYLLGMSLDNISLMGLTIAVGLVVDDAIVVLENIMRYMEEGE 418

Query: 419  HRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTG----EFMKYLPLTLMATLTAS 474
                A     + +A+ + + + + +A F P+ F P   G    EF   + L ++ +  AS
Sbjct: 419  SPWRAALLGVREVAFTVVSISLSLVAVFIPIFFMPGTLGLLFHEFAWVVSLAILVSAAAS 478

Query: 475  LVMALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIK 534
            L +  L VP+L      P     A +     L    F     + + Y   L  AI H   
Sbjct: 479  LTVIPLLVPMLIKHQAHP-----APEPAWSQLFERGFE---SLRRGYGHALDWAIGHRWV 530

Query: 535  ILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVM 594
            ++  AL+        Y  A  G  FFP+ D    +  + +  D+S   + ++   +   +
Sbjct: 531  MVSTALVTVLLSVLLYWSAPKG--FFPQEDLGQVTANIDTPQDMSYEGRLKVAQQLGNTL 588

Query: 595  LGHDEFESVYTRTGGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIEY---- 650
            L       + T+   D +   + +T      R  +  +++ +   T   PG+ + Y    
Sbjct: 589  LQDPAVSDMVTKV--DHDTTQLMLTLKGSAQRPPMAQVLQIMRAETRYLPGITVFYSPVQ 646

Query: 651  KFPDAGPPVEHDLEIEISARVADD---LDKAAQQVRLWAEANPALTNLSDNGSKPGIDWK 707
                 G   + + +  + +  + D   L+  A ++    +       ++ +    G+  +
Sbjct: 647  NLKVGGRSSKSNYQYTLQSVNSGDGLSLNDWANKLMDGMKKTGVFVGVNSDAQLNGLQAQ 706

Query: 708  IDIRRDDASRFAADATLVGNTVQFVTNGLKIGD--YLPDDSDEEVDILVRYPSEYRDIGR 765
            + I R+ AS    D   + + + +   G +     Y P+DS     +++   S +R    
Sbjct: 707  LQIDRNKASLMGVDIDQIRSNL-YAAFGTQQASTIYAPEDS---YQVIMEVDSAFRQ-NE 761

Query: 766  FDQLRV---KTAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPA 822
             D  ++    +A  L+P+T F  I   Q    ++       I+V  DL  G +L+    A
Sbjct: 762  SDLSKIYVRSSANTLLPVTTFTHITRAQGVTAVNHQGQLPAITVSFDLAPGKSLSDATNA 821

Query: 823  IEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLI 882
            I Q  + + +P+SV     GQ    + S        ++ALA + +IL   + S+     I
Sbjct: 822  IAQVQQAIQMPNSVIGSYAGQAALYQQSQTSQIWLIVMALAVIYVILGVLYESWIHPLTI 881

Query: 883  LTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLID-TYNQLLKRGLSR 941
            L  +  + VG    L +       I + IG++ L GIV  N I++ID        +G+S 
Sbjct: 882  LLGLPSAAVGALLALRLLNLDLTFI-AMIGILLLIGIVKKNAIMMIDFALAAQRTQGMSP 940

Query: 942  EEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFG-APSTQWWSQLATAV 1000
             +AI++  +QR RP+++TT+  ++G LP             I FG     +    +  AV
Sbjct: 941  HDAIVQACMQRFRPIMMTTLCAMMGALP-------------IAFGWGAGAELRQPMGVAV 987

Query: 1001 AGGLAFATVLTLVLTPCLLML 1021
             GGL F+ ++TL +TP L +L
Sbjct: 988  VGGLLFSQLITLFITPVLYLL 1008



 Score = 57.0 bits (136), Expect = 7e-12
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 15/222 (6%)

Query: 278  PAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQN 337
            PAI +      G+++ +    +  V    Q     PN+++       +     +    Q 
Sbjct: 801  PAITVSFDLAPGKSLSDATNAIAQV----QQAIQMPNSVIGSYAGQAA-----LYQQSQT 851

Query: 338  NILSAIILVVVVIIAILGVRTS-----LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFAL 392
            + +  I++ + VI  ILGV        L + + +P + +  LL L +  L +  + +  +
Sbjct: 852  SQIWLIVMALAVIYVILGVLYESWIHPLTILLGLPSAAVGALLALRLLNLDLTFIAMIGI 911

Query: 393  IMAVGMLVDGAIVVTEFA-DRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLF 451
            ++ +G++   AI++ +FA   +  +GM   +A   A  +   PI  +T   +    P+ F
Sbjct: 912  LLLIGIVKKNAIMMIDFALAAQRTQGMSPHDAIVQACMQRFRPIMMTTLCAMMGALPIAF 971

Query: 452  WPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQ 493
                  E  + + + ++  L  S ++ L   PVL  LF RP+
Sbjct: 972  GWGAGAELRQPMGVAVVGGLLFSQLITLFITPVLYLLFDRPE 1013