Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1051 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  284 bits (727), Expect = 2e-80
 Identities = 238/1031 (23%), Positives = 456/1031 (44%), Gaps = 43/1031 (4%)

Query: 8    ALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRP 67
            ++ R+  ++ L   + + G+ +Y  +  E  P  +  ++ VS  + G +PS+ E  + R 
Sbjct: 7    SIKRSTIVVVLFTILTLLGIFSYTQMSYELLPKFSPNVVTVSTVYPGAAPSEVENSVTRK 66

Query: 68   LEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEP 127
            LE  + S+EG+  M +T+ E  + + +E +  VD+   + D +  +D     LP D D P
Sbjct: 67   LEDALASLEGIDVMKSTSLESFSIITIELDDDVDVDLILQDAQRDIDAVLGDLPEDVDPP 126

Query: 128  TVNEVTLAAEQPVLSVVLYGTVPERTTV-LIARQLRDKLESFRQILSVDIAGDREEIVEI 186
            ++ + +L  + P++ +  Y  +       L+ ++++  +     +  V++ G  E  +++
Sbjct: 127  SLGKFSLD-DMPIMQMGAYSNLTATDFYDLMDQRIQPMISQIDGVAQVNLLGGAEREIKV 185

Query: 187  IVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLELPIK 246
             +D   + +YG+    +   IA  N     G + +   +  +++   F  + ++ EL + 
Sbjct: 186  NLDQNKLNTYGISPLQVNQAIAQANLDFPTGKLKSDKEQILIRLAGKFTQVDEIGELIVS 245

Query: 247  VEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEA 306
                  I   DVA V  S +D E  +RL+G  AI + I+K+S  N ++  E V   L + 
Sbjct: 246  YADGSPIKIKDVAEVVDSNKDEEILSRLNGNSAIGISIQKQSDANAVDVAERVNKALAQL 305

Query: 307  Q---ARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL-GVRTSLLV 362
            +   A DD    L  +   D SE      N + ++++ A++LV V+++  L   R +++V
Sbjct: 306  ETTYAGDD----LRFEISQDSSEFTLEAANAVIHDLIIAVVLVAVIMLLFLHSFRNAVIV 361

Query: 363  GVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSE 422
             +++P S +    V+ + G T+N++ L AL + VG+LVD AIVV E   R M++G    +
Sbjct: 362  MIAVPMSIIATFTVMYLAGFTLNLMSLLALSLVVGILVDDAIVVIENIYRHMEKGKSAIQ 421

Query: 423  AYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFV 482
            A  D  + +   +T+ T   +  F PL     +    +    +T+      SL++A   +
Sbjct: 422  ASYDGIREIGGTVTSITLVIVVVFVPLSMTGGLISGILTQFSITVAVATMMSLLVAFTLI 481

Query: 483  PVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALLM 542
            P+L S F + + +   +    +   NG               L  +  H I  L    ++
Sbjct: 482  PLLTSRFSKLEHLDPKSIFGKIV--NGFEGFLDAFVAWLTGILKWSFNHKIITLVATFVL 539

Query: 543  SAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEFES 602
              +     G   +G+EF  + D   F +++      +L E +    + E  +  +    S
Sbjct: 540  FVSSFMLVGYGFIGSEFVSQGDKGEFIMRLELPKSATLEETNFTTREAENFLTKNPMVTS 599

Query: 603  VYTRTG-GDDEIGVVQITP---------VDWQYRR-SVKAIIEELE-QVTDTFPGVEI-E 649
            V+T  G     +   Q TP         VD + R  +      E+E  + +   G E   
Sbjct: 600  VFTTVGQTTGSMSGSQSTPYASEITVKMVDGKKRNLTAPEFAREMEIALEENIVGAEFTA 659

Query: 650  YKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKID 709
                  G   +  ++I +S    D L   +Q+V    E  P       +      + +++
Sbjct: 660  VPIGITGTANDAPIQIVLSGPDLDTLKSFSQRVLAEVEKVPGTRKAQTSLEDGNPEIRVE 719

Query: 710  IRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPS-EYRDIGRFDQ 768
            + R   S    D  +VG T+Q   NG     Y   D D E DI +R    + + +   + 
Sbjct: 720  VDRAKMSDLGLDMAMVGGTMQVAFNGNTDTKY--RDGDYEYDINIRMDEFDRKSVADIEN 777

Query: 769  LR-VKTAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQAL 827
            L  V T    V L  FA+ IP +    ++R D    ++V + +  G         I++ +
Sbjct: 778  LAFVNTKGQTVLLKQFAKAIPSEGPSELNRQDRITSVTVQSQV-SGRPSGTVGTEIQERI 836

Query: 828  RELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTAVI 887
             +L+LP  V     G  + QE     L  A + ++  + +I++  ++++    +++ ++ 
Sbjct: 837  AKLDLPKEVTVAYEGDMKMQEEGFGSLGVALLASILLIYLIMVALYDNYVFPLVVMFSLP 896

Query: 888  FSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAILR 947
             + +G    L +       I S +G+I L G+V  N I+L+D  NQL   GL  + A+++
Sbjct: 897  LAVIGALLALAMSGSALS-IFSILGLIMLMGLVAKNAILLVDFTNQLKAAGLEVKAALVK 955

Query: 948  TGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLAFA 1007
                R RP+L+TT+  + G+LP+ L                  +W + LA A+ GGL  +
Sbjct: 956  AVEIRFRPILMTTLAMVFGMLPIALA------------SGAGAEWKNGLAWALIGGLISS 1003

Query: 1008 TVLTLVLTPCL 1018
              LT+V+ P +
Sbjct: 1004 MFLTMVVVPVI 1014



 Score = 59.3 bits (142), Expect = 1e-12
 Identities = 38/154 (24%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 339  ILSAIILVVVVIIAILGVRT-SLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVG 397
            +L++I+L+ ++++A+       L+V  S+P + +  LL LA+ G  ++I  +  LIM +G
Sbjct: 867  LLASILLIYLIMVALYDNYVFPLVVMFSLPLAVIGALLALAMSGSALSIFSILGLIMLMG 926

Query: 398  MLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTG 457
            ++   AI++ +F ++    G+    A   A +    PI  +T   +    P+        
Sbjct: 927  LVAKNAILLVDFTNQLKAAGLEVKAALVKAVEIRFRPILMTTLAMVFGMLPIALASGAGA 986

Query: 458  EFMKYLPLTLMATLTASLVMALLFVPVLGSLFGR 491
            E+   L   L+  L +S+ + ++ VPV+  +F R
Sbjct: 987  EWKNGLAWALIGGLISSMFLTMVVVPVIYYIFDR 1020