Pairwise Alignments
Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1035 a.a., putative efflux pump membrane transporter TtgB from Alteromonas macleodii MIT1002
Score = 326 bits (835), Expect = 6e-93
Identities = 251/1031 (24%), Positives = 471/1031 (45%), Gaps = 50/1031 (4%)
Query: 4 LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
L D ++ R + + +++ G+ + + PD+ PI+ VS ++ G S + E
Sbjct: 3 LSDVSVKRPVFATVINLLLIIFGIVAFTMLSLREYPDIDPPIVSVSTTYTGASANIVETR 62
Query: 64 IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
I + LE + IEG+K +T+T+ G + + +EF + D+ A DVR+ V A LP
Sbjct: 63 ITQLLEDRISGIEGIKNVTSTSRNGRSDITIEFKLSRDIDAAANDVRERVSRALNNLPDQ 122
Query: 124 SDEPTVNEVTLAAEQPVLSVVLYGTVPE--RTTVLIARQLRDKLESFRQILSVDIAGDRE 181
+D P V++ + E V+ L T T R L D+L + V I G R
Sbjct: 123 ADPPEVSKAN-SDESAVVWYNLRSTNLNTMELTDYAERVLVDRLSIVDGVARVQIGGGRR 181
Query: 182 EIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVL 241
+++ +D M + G+ +D+ +I N + AG V++ F V+V F + D
Sbjct: 182 YAMKVFLDRNAMAARGITVNDVEQVIRTENVELPAGEVESTDRNFEVRVARTFLTPDDFA 241
Query: 242 ELPIKV-EGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVK 300
L + + + ++ G++A V + D E+ R DG I L I K+S N ++ K
Sbjct: 242 ALTVAIGDNGYLVRLGEIAHVELTAEDDETEFRGDGVNMIGLGIIKQSKANTLDVARAAK 301
Query: 301 AVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTS 359
A + +A P+N+ + +D S ++ ++++ + A+++VV+VI LG +R +
Sbjct: 302 AQIERIEAT--LPDNIFIVPSYDSSVFIEASIDEVYETLGIAMLMVVIVIYLFLGNIRAT 359
Query: 360 LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMH 419
L+ V++P S + +V+ G ++N++ L A+++A+G++VD AIVV E RR++ G
Sbjct: 360 LIPAVTVPVSIIAAFIVMYALGFSINLLTLLAMVLAIGLVVDDAIVVLENIYRRIEMGEP 419
Query: 420 RSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMAL 479
A AK + + + A+T ++ F PL+F G L + A + S AL
Sbjct: 420 PILAAYRGAKEVGFAVIATTLVLISVFVPLVFLEGNIGRLFTEFALAIAAAVAFSSFTAL 479
Query: 480 LFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGA 539
P++ S K+ + + R + + + + Y++TL + PI +L
Sbjct: 480 TLSPMMAS------KILK-KRTRSSGFGSWMDKKFSKLENGYFNTLGKTLHQPILML--L 530
Query: 540 LLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDE 599
+L A +A + +EF P+ D F + + + S + + IE +++ + E
Sbjct: 531 MLAIAIVALVQLSEKVASEFVPKEDRGNFFILMNAQEGASFESNAKNLEKIESILMPYRE 590
Query: 600 ---FESVYTRTGG-DDEIGVVQITPVDWQYRR-SVKAIIEELEQVTDTFPGVEI------ 648
+ RT G G+ + DW R S ++++E+ ++ P V
Sbjct: 591 SGKINRLLVRTPGFGGNAGIAIVGSADWDERDFSTFSLMDEISAKLNSVPDVRAFAIMRS 650
Query: 649 EYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKI 708
G PV+ L+ + + + D Q+ A NP L L + + +
Sbjct: 651 GISGGGLGRPVQFVLQGDTYENLVEWRDIVLQK----AAQNPRLIRLDSDYKETSPQLLV 706
Query: 709 DIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVR-YPSEYRDIGRFD 767
+I RD + + +G T++ + ++ +L D EE D+++ ++R +
Sbjct: 707 NINRDRVADLGVSISDIGGTLEVMLGQRRVSTFL--DRGEEYDVIMEGIEEDFRSPNSIE 764
Query: 768 QLRVKTAQ--GLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQ 825
L V++++ L+P+ N + ++R + R +++ A+L +GY L L +E
Sbjct: 765 NLYVRSSRTGELIPMDNLLTFEEQATSAQLNRYNRMRAVTISANLADGYTLGQALEYLEN 824
Query: 826 ALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILTA 885
+ LP +V +G+++ + + FM+ALA +IL QF S+ +I+
Sbjct: 825 IV-STELPDNVSIDYKGESQLYQEAGNSFVYVFMLALAVTYLILAAQFESWVHPLVIMLT 883
Query: 886 VIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEAI 945
V + VG + GL I S IG++ L G+ N I++++ NQL G+ E A+
Sbjct: 884 VPLALVGAYIGLFFSDMTIN-IYSQIGLVMLIGLAAKNGILIVEFANQLRDAGMEFEYAL 942
Query: 946 LRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGLA 1005
R QRLRP+++T TT+ LP+VL P + + + G+
Sbjct: 943 KRAAAQRLRPIVMTGFTTVFSSLPLVLA------------SGPGAESRMVIGMVIFSGVL 990
Query: 1006 FATVLTLVLTP 1016
+ +TL + P
Sbjct: 991 VSAFMTLYVVP 1001
Score = 52.4 bits (124), Expect = 2e-10
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 337 NNILSAIILVVVVIIAILGVRTS-----LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFA 391
N+ + +L + V IL + L++ +++P + + + L +T+NI
Sbjct: 850 NSFVYVFMLALAVTYLILAAQFESWVHPLVIMLTVPLALVGAYIGLFFSDMTINIYSQIG 909
Query: 392 LIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLF 451
L+M +G+ I++ EFA++ GM A + AA + PI + TT+ + PL+
Sbjct: 910 LVMLIGLAAKNGILIVEFANQLRDAGMEFEYALKRAAAQRLRPIVMTGFTTVFSSLPLVL 969
Query: 452 WPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGR 491
E + + + + + S M L VP S R
Sbjct: 970 ASGPGAESRMVIGMVIFSGVLVSAFMTLYVVPTAYSWLAR 1009
Score = 36.2 bits (82), Expect = 1e-05
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 865 MAIILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGI-IMSGIGVIALAGIVVNN 923
M +I+I F +A LI + ++ + A ++++ F I +++ + ++ G+VV++
Sbjct: 344 MVVIVIYLFLGNIRATLIPAVTVPVSI-IAAFIVMYALGFSINLLTLLAMVLAIGLVVDD 402
Query: 924 NIVLIDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMV-LEMNIDIINQK 982
IV+++ + ++ G A R + V+ TT+ I +P+V LE NI +
Sbjct: 403 AIVVLENIYRRIEMGEPPILAAYRGAKEVGFAVIATTLVLISVFVPLVFLEGNIGRL--- 459
Query: 983 IEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTPCL 1018
+++ A A+A +AF++ L L+P +
Sbjct: 460 ----------FTEFALAIAAAVAFSSFTALTLSPMM 485