Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., Efflux pump periplasmic linker BepF from Xanthobacter sp. DMC5

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 26/261 (9%)

Query: 71  IELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDA-------QLE 123
           +E  GR     +  I A +   +  V   +G+MV + Q +  I+K    A        +E
Sbjct: 54  MEFVGRVEAPERVDIRARVKAMLEAVLFKEGEMVKEGQPLYRIEKPPFQADVQQAEGDVE 113

Query: 124 RAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAA-------ALTDAQSSLSTVQRLLDN 176
           RAKA L + + +   A  L  K     VA   A A       AL  A+++L+T +  L  
Sbjct: 114 RAKAALTLAKIQRERAEELLTKNAGTVVARDQAVANEESAKGALLTAEAALNTAKINLGY 173

Query: 177 TQVRAPFDGVVETLPIEKGDFVG-IGDPVASIIDLHKLVIEADVSERHIQHVQLEQA--- 232
           T + +P  G +      +G  +G    P+A+++  + + +   VS+R  Q  Q ++    
Sbjct: 174 TDIVSPIAGRIGRTAFTRGHIIGPESGPLATVVSQNPMYVTFPVSQRDYQEAQKDEGKVD 233

Query: 233 -----ARIRFIDGT--QTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVEL- 284
                 RI+F DG+     G++ +I    S  T+T  +  +V NP+  +  G    VEL 
Sbjct: 234 LSNVEVRIKFPDGSIYGEVGRINFIDVSVSRTTDTIIMRADVPNPKGQLVDGQLVRVELK 293

Query: 285 SLMSQAAIKITPAMLALDEEG 305
           S   +  + I  A L  D+ G
Sbjct: 294 SGKPEERVVIPQAALIADQAG 314