Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., secretion protein HylD from Pseudomonas simiae WCS417

 Score = 77.0 bits (188), Expect = 7e-19
 Identities = 84/356 (23%), Positives = 142/356 (39%), Gaps = 31/356 (8%)

Query: 21  LISFSFIILLALWLGLGDSNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPD 80
           L   + +I+L       D+ AE P     +   +   G Q  + T         G  A  
Sbjct: 9   LTPLALLIILNGCNSKADTAAETPLPRPVLAAKVEAAGTQQSAYT---------GVVAAR 59

Query: 81  RQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAK-------AQLKVRQ 133
            ++ +G  ++G++ E K+  GQ V++   + ++D GD +  L  AK       AQL+ R+
Sbjct: 60  TESDLGFRVSGKVIERKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVHAAQAQLRQRR 119

Query: 134 QEFNAASALKNKGLQGEVAFTNAA-------AALTDAQSSLSTVQRLLDNTQVRAPFDGV 186
            + N    L + G      F  +A       A L  AQS  S ++     + ++A  DG+
Sbjct: 120 DDENRYQRLASTGAVSRQIFDQSATLLRVAEAELASAQSDASQIENRRTYSVLKADGDGI 179

Query: 187 VETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQ-- 244
           +  + +++G  V  G  VA +   H    EA V+    Q  Q  Q A + F  G   Q  
Sbjct: 180 ITDVRVDRGQVVAEGQIVARL--AHDGAREAIVNLPENQRDQAAQKA-LAFPFGAPDQAV 236

Query: 245 -GKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDE 303
              +R +S  + P T T+     +         G +  V L    QA     P    LD 
Sbjct: 237 TATLRELSASADPTTRTYRARYVLHGAVDRFALGSTITVRLQGNGQAQQTRVPIGALLDS 296

Query: 304 EGNLGVKTL-QGEHVKFVPIQLVK-AEQDGVWLTGLGEQVDIITRGQGFVRDGDKV 357
               GV  +   + V F P+++    ++D +  +G+     I+  G   +  GD V
Sbjct: 297 GQGTGVWLIGADDKVSFAPVKVASLGQEDALLDSGVSPGQVIVALGAHLLHSGDPV 352