Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 69.7 bits (169), Expect = 9e-17
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 84  KIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASA-- 141
           +I  +++G I  V +   Q+VTK Q++  +D+      L +A+A +  RQ+    A    
Sbjct: 49  QIAPDVSGLIQRVDVRDNQLVTKGQVLFAVDQDRFKLALRQAQAAVADRQETLAQAQREY 108

Query: 142 LKNKGL----------QGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLP 191
            +N+GL          + +     A +AL +AQ ++ + Q  LD + +R+P DG V    
Sbjct: 109 KRNRGLGNLVPSEQLEESQSRVARAQSALAEAQVTVDSAQLNLDRSVIRSPVDGYVNDRA 168

Query: 192 IEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFI-DGTQTQGKVRYI 250
               +FV  G PV S++D +   I+    E  +  + +     IR I D  +  G V+ I
Sbjct: 169 PRTQEFVTAGRPVLSVVDSNSFHIDGYFEETKLDGIHVGMGVDIRVIGDNARLHGHVQSI 228