Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Secretion protein HlyD precursor from Variovorax sp. SCN45

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 20/336 (5%)

Query: 41  AEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQAKIGAEIAG-RIAEVKIA 99
           A++   A     P   V      AT+    +   G  A  ++A +G+E  G ++AEV++ 
Sbjct: 31  ADKAAAAGPAPKPALTVTVAAPEATELTLTLAANGNVAAWQEAVVGSESNGLKLAEVRVN 90

Query: 100 KGQMVTKNQIIALIDKGDLDAQLERAKAQLK-------------VRQQEFNAASALKNKG 146
            G  V K Q++A+     + A + +++A L               R +   A  AL  + 
Sbjct: 91  VGDTVKKGQVLAVFSPETVRADIAQSRASLAEARATAADAAGNAARARTLQATGALSQQQ 150

Query: 147 LQGEVAFTNAAAALTDAQSSLSTVQRLLD-NTQVRAPFDGVVETLPIEKGDFVGIGDPVA 205
           +         A A  +A  ++   Q +   NTQV AP DGV+ +     G  V  G  + 
Sbjct: 151 INQYQTTEQTAKARVEAAEAVLAAQEVRGRNTQVLAPDDGVISSRTATVGSVVAAGTELF 210

Query: 206 SIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQGKVRYISRLSSPATNTFAIEV 265
            +I   +L   A+V+   +  + +   A +    G Q +GKVR I+    P T    + V
Sbjct: 211 KLIRQGRLEWRAEVTSAELSRIAVGTNAFVVSASGAQVRGKVRSIAPTVDPQTRAALVYV 270

Query: 266 EVDNPQQ--AIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGE-HVKFVPI 322
           ++ N QQ   I AG+ A  +  L  ++     P    +  +G   V  L+ + HV  + +
Sbjct: 271 DLPNVQQNTGIKAGMFARGDFEL-GRSTAPTVPQSAIVPRDGFNNVFLLKPDNHVAQLKV 329

Query: 323 QLVKAEQDGVWLT-GLGEQVDIITRGQGFVRDGDKV 357
           Q+ +   D + +T  L +   ++ +G GF+ DGD V
Sbjct: 330 QVGRRLNDRIEITSALPQGAKVVVQGAGFLNDGDLV 365