Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., CzcABC family efflux RND transporter, membrane fusion protein from Variovorax sp. SCN45

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 18/240 (7%)

Query: 78  APDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQL---ERAKAQLKVRQQ 134
           AP++  K+ + + GRI +++ A G  V     +  +D  DL +      +A+A L+  Q+
Sbjct: 82  APEKLVKVTSPVTGRIVKLQRALGDSVKAGDPLFTLDSADLSSAFGDATKAEATLRQAQR 141

Query: 135 EFNAASALKNKGLQG----EVAFTNAAAALTDAQSSLSTVQRLLDNTQ--------VRAP 182
           +F     L    +      E A     AA +DAQ + + + +L   T         +R+P
Sbjct: 142 DFARQKLLFEADITARKDYEAAELAFGAATSDAQVTKNRLAQLGAGTGGGSHRDYVLRSP 201

Query: 183 FDG-VVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRF--ID 239
             G V+E    + G +  I  PV ++ DL  + + A VSE+ I  +++ Q ARI      
Sbjct: 202 ISGRVIEMTGAQGGYWNDINAPVMTVADLSTVFLTASVSEKDIAALRVGQKARIDLSAYP 261

Query: 240 GTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAML 299
                G V+YI  +    T T  + V VDN Q     G+ A+V  S  +  A+ +  + L
Sbjct: 262 DQAFDGTVKYIGEVLDADTRTVKVRVAVDNRQGRFRPGMFAKVVFSGEAHPALTVPASAL 321