Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., efflux RND transporter periplasmic adaptor subunit from Variovorax sp. OAS795

 Score =  107 bits (268), Expect = 4e-28
 Identities = 98/369 (26%), Positives = 161/369 (43%), Gaps = 27/369 (7%)

Query: 21  LISFSFIILLALWLGLGDSNAEEPQTAMEIQVPLAKVGYQTFSAT-------QTDKVIEL 73
           L++   +I  A+WL      A E Q A +   P A     T + T       +    +  
Sbjct: 13  LLALVIVIAAAVWLVR--KPASETQAAADKAKPGAPAARPTLTVTVAKPELTELTLTLAA 70

Query: 74  YGRTAPDRQAKIGAEIAG-RIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLK-- 130
            G  A  ++A +G+E  G ++AEV++  G +VTK Q++A+     + A + +++A L   
Sbjct: 71  NGNVAAWQEASVGSESTGLKLAEVRVNVGDVVTKGQVLAVFSPETVQADIAQSRASLAEA 130

Query: 131 -----------VRQQEFNAASALKNKGL-QGEVAFTNAAAALTDAQSSLSTVQRLLDNTQ 178
                       R +   A  AL  + + Q + A   A A +  A++ L+  Q    NTQ
Sbjct: 131 RATAADAAGNAARARTLQATGALSQQQINQYQTAEQTAKARVEAAEAVLAAQQVRGRNTQ 190

Query: 179 VRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFI 238
           V AP DGV+ +     G  VG G  +  +I   +L   A+V+   +  + +   A +   
Sbjct: 191 VLAPDDGVISSRTATVGSVVGAGTELFRLIRQGRLEWRAEVTSAELSRIAVGTTAFVVSA 250

Query: 239 DGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQ--AIPAGVSAEVELSLMSQAAIKITP 296
            G Q +GKVR I+    P T    + V++ N QQ   I AG+ A  +  L   +A  +  
Sbjct: 251 SGAQVRGKVRSIAPTVDPQTRAALVYVDLPNVQQNTGIKAGMFARGDFELGRSSAPTVPQ 310

Query: 297 AMLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGVWLT-GLGEQVDIITRGQGFVRDGD 355
           A +   +  N     L    V  + +Q  +   + V +T  L E   I+ +G GF+ DGD
Sbjct: 311 ASIVPRDGFNNVFMLLPDNRVAQLKVQTGRRVGERVEITSALPEGAQIVVQGAGFLNDGD 370

Query: 356 KVLATQLSA 364
            V     SA
Sbjct: 371 LVRVVPASA 379