Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 93/359 (25%), Positives = 151/359 (42%), Gaps = 28/359 (7%)

Query: 24  FSFIILLALWLGLGDSNAEEPQTAMEIQ-VPLAKVGYQTFSATQTDKVIELYGRTAPDRQ 82
           F++I+ +AL L    +  +EPQ   E + V + ++G    ++T         G      +
Sbjct: 4   FAYIVPIALLLL--PACRDEPQVRDERRAVAVQRIGADAGTSTS------YAGEIRSAFE 55

Query: 83  AKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLK-------VRQQE 135
           ++IG E+AGRI E ++  G  V   Q +  +D  D    L+ A AQ         V+Q +
Sbjct: 56  SQIGFEVAGRIVERRVDLGSSVHAGQTLLRLDNSDYARALDSAAAQSSSARTAAAVQQAD 115

Query: 136 FNAASALKNKGLQGEVAFTNAAAALTDAQSSL-------STVQRLLDNTQVRAPFDGVVE 188
              +  L  +G      F    AA   AQ+ L        T    L  T + AP  GVV 
Sbjct: 116 LARSRELLKQGFISPAEFDQQKAAAIQAQAQLRAAGAQSGTASAQLSRTVLTAPRAGVVT 175

Query: 189 TLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFID--GTQTQGK 246
            +  E G  VG G  + ++ D  +  I   + E  +  ++      +      G +   +
Sbjct: 176 QIQGEVGQVVGAGQTIVTLADPSRPEIAVALPEGSLDRIRSASRLSVSVWSSPGRRYAAR 235

Query: 247 VRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGN 306
           +R IS  + PAT TFA  + VD P QA+  G +AE+ +   +  A    P    L   G 
Sbjct: 236 LRSISGAADPATRTFAARLSVDAPAQALLMGETAELRVEGAAGDAAVRVPLTAVLQSNGR 295

Query: 307 LGVKTLQGEHVKFVP--IQLVKAEQDGVWL-TGLGEQVDIITRGQGFVRDGDKVLATQL 362
                L    +   P  +Q+  A+ D + + +GL     I+T G   +R G+KV   Q+
Sbjct: 296 AQAWVLDRRTMVVQPRAVQIGAAQGDMLTIRSGLKPGETIVTAGVHLLRAGEKVRIVQV 354