Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

 Score = 68.2 bits (165), Expect = 3e-16
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 84  KIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAAS--A 141
           +I  +++G I +V++   Q V +  ++  ID+      L +AKA L  RQ+    AS  A
Sbjct: 49  QIAPDVSGLIQKVEVRDNQTVKRGDVLFTIDQDRFTLALRQAKATLGERQETLAQASREA 108

Query: 142 LKNKGLQGEVAF----------TNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLP 191
            +N+ L   VA             A +A+++AQ ++ T Q  LD + VR+P DG +    
Sbjct: 109 QRNRKLGNLVAAEQLEESQSREARARSAVSEAQVAVDTAQLNLDRSVVRSPVDGYLNDRA 168

Query: 192 IEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFI-DGTQTQGKVR 248
               +FV  G PV S++D     ++    E  +  + +  A  IR + D T+ +G V+
Sbjct: 169 PRNHEFVTAGRPVLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGDNTRLRGHVQ 226