Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. RS175

 Score = 70.5 bits (171), Expect = 7e-17
 Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 24/314 (7%)

Query: 63  SATQTDKVI-ELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQ 121
           SA  TD    E+  R  PD   +IG +++ R+ E    +GQ V  NQ +A +D  D+  Q
Sbjct: 42  SAQATDSYPGEVRARFEPDLAFRIGGKVSRRLVE----EGQRVKANQPLAELDPEDVRLQ 97

Query: 122 LERAKAQLKVRQQEFNAASALKNKGL--------------QGEVAFTNAAAALTDAQSSL 167
           LE  +AQ+   +   N   A +++                  E  + + AA L   ++  
Sbjct: 98  LEATRAQVAAAEANLNLVRAERDRYKTLLDRQMVSRSQYDNAENLYRSGAARLKQIKAEF 157

Query: 168 STVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHV 227
                    + +RAP DGVV    +E G  V  G  V ++    +  +   + E+     
Sbjct: 158 DVASNQASYSVLRAPQDGVVARRSVEVGQVVSAGQTVFTLATDGEREVLISLPEQSFGRF 217

Query: 228 QLEQAARIRFID--GTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELS 285
           ++ Q   +        +  G++R +S  + P + TFA  V           G SA V + 
Sbjct: 218 KIGQPVSVELWSQPDQRFSGRIRELSPAADPKSRTFAARVAFTAGSVPAELGQSARVFIQ 277

Query: 286 LMSQAAIKITPAMLALDEEGNLGVKTLQGEH-VKFVPIQL-VKAEQDGVWLTGLGEQVDI 343
              +  + + P      E G   V  +   H +K VP+++    E+    L GL     +
Sbjct: 278 AADKVPLSV-PLSALTAENGATYVWVVNANHTLKKVPVRVGAFGEKTVPVLEGLSPDDWV 336

Query: 344 ITRGQGFVRDGDKV 357
           +  G   + DG +V
Sbjct: 337 VAAGVHVLLDGQQV 350