Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 67.4 bits (163), Expect = 6e-16
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 35/261 (13%)

Query: 81  RQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKG--------------DLDAQLERAK 126
           R+  +GA+++G++  + +A G  V K+Q++ +ID                +L AQ ++A+
Sbjct: 60  RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAE 119

Query: 127 AQLKV------RQQEFNAASALKNKGLQ---GEVAFTNAAAALTDA-----QSSLSTVQR 172
           A+LK+      RQQ      A+  + L     E+A   A     DA     Q+SL T + 
Sbjct: 120 AELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKT 179

Query: 173 LLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASII---DLHKLVIEADVSERHIQHVQL 229
            LD T++ AP  G V  +   +G  V       +I+   D+  ++++A VSE  + H++ 
Sbjct: 180 NLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLKP 239

Query: 230 EQAARIRFIDGTQTQGKVRYISRLSSPATNTFAI----EVEVDNPQQAIPAGVSAEVELS 285
            Q A    +    T+ + +    L +P     AI      EV NP   +   ++A+V + 
Sbjct: 240 GQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQ 299

Query: 286 LMSQAAIKITPAMLALDEEGN 306
           L     +   P     D  G+
Sbjct: 300 LTDVKNVLTIPLSALGDPVGD 320