Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 256 a.a., Uncharacterized protein YdhJ from Escherichia coli ECRC62

 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 14/185 (7%)

Query: 82  QAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDK-----GDLDAQLERAKAQ--LKVRQQ 134
           +  I  +++GRI E+ I   Q+V    ++  IDK      +L+AQ + AKAQ  L     
Sbjct: 15  KVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANN 74

Query: 135 EFNAASALKNKGLQGEVAFTN------AAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVE 188
           E N    L    +  E   T         A++  AQ++L   Q  L  T++RAP  G V 
Sbjct: 75  EANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVT 134

Query: 189 TLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIR-FIDGTQTQGKV 247
            L    GD+   G P+ +++D H   +     E  ++H++    A+I  + D    +G V
Sbjct: 135 NLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLRGHV 194

Query: 248 RYISR 252
             I R
Sbjct: 195 SSIGR 199