Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., Uncharacterized protein YdhJ from Escherichia coli ECRC101

 Score = 71.2 bits (173), Expect = 3e-17
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 14/185 (7%)

Query: 82  QAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDK-----GDLDAQLERAKAQ--LKVRQQ 134
           Q  I  +++GRI E+ I   Q+V    ++  IDK      +L+AQ + AKAQ  L     
Sbjct: 44  QVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKANN 103

Query: 135 EFNAASALKNKGLQGEVAFTN------AAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVE 188
           E N    L    +  E   T         A++  AQ++L   Q  L  T++RAP  G V 
Sbjct: 104 EANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQTQWQLAQTEIRAPVSGWVT 163

Query: 189 TLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIR-FIDGTQTQGKV 247
            L    GD+   G P+ +++D H   +     E  ++H++    A+I  + D    QG V
Sbjct: 164 NLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHV 223

Query: 248 RYISR 252
             I R
Sbjct: 224 SSIGR 228