Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 17/242 (7%)

Query: 120 AQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQV 179
           +Q+E+ +AQ +V   + NAA    + G         A   + DAQ  ++ +   L  T V
Sbjct: 158 SQVEQTQAQAEVAAAKLNAARQAVSAG--------EADIKVVDAQ--IADIDLKLTRTGV 207

Query: 180 RAPFDGVVETLPIEKGDFV-GIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFI 238
           + P  G+V     + G    G G+P+ ++I    + + AD+SE  IQ V++ Q A +   
Sbjct: 208 KTPVAGIVSAKNAKVGAIASGAGNPLFTVIKDGAIELVADLSETDIQKVKIGQKAYLTVA 267

Query: 239 DGTQ-TQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPA 297
            G +  +GKVR +S    P T   ++ V +     A  +G+ A   + +    A+ +  +
Sbjct: 268 GGAEKIEGKVRLVSPTVDPTTRLGSVHVVLPENSPA-RSGMYASAAIIVEETNALALPLS 326

Query: 298 MLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGV--WLTGLGEQVDIITRGQGFVRDGD 355
            +    EG+   + ++G+ VK V I+    E  G    ++GL     ++ +   FVRDGD
Sbjct: 327 AVTSGREGST-TRKVEGDVVKQVKIE-TGIEDSGFIEIVSGLAAGDKVVEKAGAFVRDGD 384

Query: 356 KV 357
           ++
Sbjct: 385 RI 386