Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 7/273 (2%)

Query: 88  EIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGL 147
           +++G ++E++ A G  V K Q++A +D  D +  +ER KAQ+ +R      +S+ KN   
Sbjct: 101 QVSGTLSEIRAAAGARVVKGQVLARLD--DEEQVIERDKAQVALRSA-IEKSSSYKNLKS 157

Query: 148 QGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASI 207
              +   +A  A   A+ +LST +  L    + AP +GV   +    GD V     + SI
Sbjct: 158 FSRLDVMDAQIAEEAAKLALSTAELNLKRRDIVAPIEGVAGIVAANVGDNVTTQSTIVSI 217

Query: 208 IDLHKLVIEADVSERHIQHVQLEQAARIRFID--GTQTQGKVRYISRLSSPATNTFAIEV 265
            D  ++++     ER    +++        I   G    G++  +      A+ T  I  
Sbjct: 218 DDRSEILVNFWAPERFATAIKVGMPVEATSISRPGETFTGEIEAVDNRVDEASRTIRIRA 277

Query: 266 EVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFVPIQLV 325
           +  N +  + AG+S  V +    +    + P  +  D EG+   +    +  K V +Q+V
Sbjct: 278 KFGNEKDELRAGMSFGVTMRFAGETYASVDPLAVQWDAEGSYVWRVTDNKSNK-VRVQIV 336

Query: 326 KAEQDGVWLTG-LGEQVDIITRGQGFVRDGDKV 357
           +   D V +   L E   ++  G   VR+G  V
Sbjct: 337 QRNPDAVLVKAELAEGEPVVIEGLQRVREGGAV 369