Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  167 bits (423), Expect = 4e-46
 Identities = 94/354 (26%), Positives = 172/354 (48%), Gaps = 33/354 (9%)

Query: 12  RVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVV 71
           + L++ L    +A  W++ P+  ++  A I+ ++  P+    +++   + NL +  +   
Sbjct: 9   KTLLLLLGLVTIAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNLTSLATLSA 68

Query: 72  LTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEE 131
             +I ++P++     +VQ+G+   +N+ +                   L +A +   F+ 
Sbjct: 69  CLIIAILPVIITSALLVQEGATLYKNIESGK-----------------LDVAGYIEQFKN 111

Query: 132 ISPQQIAQRIGQF--------------ATTFGSNLVSISAKILGDAT-SFVMHFFLMLFV 176
           + P      + +F              +   GS   +  A   G  T  F++ FF+ML++
Sbjct: 112 VLPPYFQHLLDRFGMGNLEGLREKIVKSAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYL 171

Query: 177 LFFLLRDHDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMW 236
           L+FLLRD  +++  +R  +PL+  Q+ RL  +   V ++ V G+ L A+ QG  GG+  W
Sbjct: 172 LYFLLRDGPELVRKVRTAVPLAEPQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFW 231

Query: 237 LAGFPG-LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSID 295
               P  L W  +M F S +P VG  ++W P   Y  L+G     + LA++ V V+G +D
Sbjct: 232 FLDIPSALLWAVLMAFLSLLPAVGAGIVWGPVAAYFLLSGAIWQGVVLALFGVFVIGLVD 291

Query: 296 NLLRPFLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEE 349
           N+LRP L+     M   +I  S LGG+ +FGL G + GPL+ A+ M  + ++ E
Sbjct: 292 NVLRPILVGKDTKMPDYLILISTLGGLSVFGLNGFVIGPLVAALFMSSWALFVE 345