Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  114 bits (284), Expect = 5e-30
 Identities = 89/346 (25%), Positives = 165/346 (47%), Gaps = 20/346 (5%)

Query: 7   LASSHRVLV-VALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65
           + ++ R+LV + LL    A +W++ P+ +++    +++   +P+     + L    +LAA
Sbjct: 1   MLNNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAA 60

Query: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125
            +  +   +++ +PL+++   +        ++  A +    +  L   P  +  +     
Sbjct: 61  GILTLGWMLLVALPLVWLGFNLADH----VRDATALIKDIQVDGLPEAPTWLGSIPFVGE 116

Query: 126 YLP--FEEISPQQIAQRIG--QFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLL 181
            L   ++ I  Q  A  +    +    G+ L++ SA+I G     ++   L L  +FF  
Sbjct: 117 RLVAMWDSIDQQGAALMVSIKPYLGQVGNWLLARSAQIGGG----ILELTLSLVFVFFFY 172

Query: 182 RDHDKIISAIRHILPLSRSQEDRLLSEIENVS---KSAVMGSFLTAIAQGVAGGIGMWLA 238
           RD  ++   +  +L   R   DR    IE V+   +  V G   TA AQ +   IG  +A
Sbjct: 173 RDGPRLAMFVHRLL--ERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQALLALIGFLIA 230

Query: 239 GFPG-LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNL 297
           G PG L  G +    S IP+ G  L+WIPAT +L   GD T+A+FL +W   ++  +DN+
Sbjct: 231 GVPGALVLGIVTFLLSLIPM-GPPLVWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNV 289

Query: 298 LRPFLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVL 343
           L+P+L+     +  +++   + GG+  FG IGL  GP + A+   L
Sbjct: 290 LKPYLISRGGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSL 335