Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., permease from Agrobacterium fabrum C58

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 81/345 (23%), Positives = 151/345 (43%), Gaps = 24/345 (6%)

Query: 18  LLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTVIIV 77
           LL   LA  +    ++  ++ A +I    +P++    +++  +  L A ++ +++   +V
Sbjct: 37  LLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTLGATIAIILIIAFLV 96

Query: 78  IPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVK----GLSLANHYLPFEEIS 133
           +P   IF A     ++  +  + W             W+      G  L   ++ +   +
Sbjct: 97  VP---IFIAASYTATEIRE-WFGWAVHVNKAGAPVPDWIAALPGIGPWLGEQWVKYIG-T 151

Query: 134 PQQIAQRIGQFATTFGSNLVSISAKILG---DATSFVMHFFLMLFVLFFLLRDHDKIISA 190
           P  I + I   +   G+N+ +I   IL     A   V+    ML  LFF+ R+       
Sbjct: 152 PGAIGEVIQLVS---GANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNGAGFTRQ 208

Query: 191 I----RHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFW 245
           I      ILP   ++ +R+   +     S V G  L AI +G+  GI  W+AG P  +  
Sbjct: 209 IDLVGERILP---TRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPSPVTL 265

Query: 246 GTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQG 305
           G + G  + IP  G  L +   ++YL  +G     + L +W    +  +D  +RP L+ G
Sbjct: 266 GVLTGVMALIPG-GAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPKLVGG 324

Query: 306 SAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEE 350
              +  L  FF L+GG++  G +GL  GP++ A+ + ++  +  E
Sbjct: 325 PIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVRE 369